Snig004286.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- Zbtb41
- Assembly
- GCA_958496155.1
- Location
- OY292314.1:9568135-9570474[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.3 3.5e+02 2.2 0.1 1 14 312 325 312 328 0.88 2 13 2 1.6e+02 3.2 3.4 3 13 446 456 445 465 0.77 3 13 0.00014 0.012 16.3 4.4 1 23 471 493 471 493 0.99 4 13 9.7e-05 0.0078 16.8 1.2 1 23 499 521 499 521 0.96 5 13 0.14 12 6.9 2.5 1 23 527 549 527 549 0.94 6 13 6.8e-07 5.5e-05 23.6 1.7 1 21 555 575 555 575 0.97 7 13 1.6e-05 0.0013 19.2 0.7 1 23 583 606 583 606 0.96 8 13 0.00073 0.059 14.1 1.4 1 23 612 634 612 634 0.99 9 13 0.0002 0.017 15.8 6.5 1 23 640 662 640 662 0.98 10 13 0.00033 0.027 15.2 0.9 1 23 667 689 667 689 0.97 11 13 0.0027 0.22 12.2 0.7 1 23 695 718 695 718 0.96 12 13 0.31 25 5.8 0.8 2 23 728 747 727 747 0.92 13 13 0.00017 0.014 16.1 0.8 1 23 753 777 753 777 0.92
Sequence Information
- Coding Sequence
- ATGGAAAACAATTCAAAGCTGTACTATCCCCAATTGGACACTTTACCACCATGTCCCAACTCGGTTCCACCAACTCAACAACCGTCCGACAAACAACTACAACAAGATCACCAACATCGATCCCAACATTTCCTCACCTATGCCATGTCGAGCAACGTAGCCATGTCCCAATCTCTAATATACAACAGCCAAAACGCCTACAACATAATGCCATATTATTCGACCCCAAACGCCTTTCCACCACCCCCCACATTCAACACGTACAACCCCCAACTGGACACGATACCTTGGCTATCCGACAACTATAAATCTCGAGACAAGGAAAAACGGGCCGATTCTATTGGTGTTTCCGAACCAATCGGAATTGGTCTATTATCTCCATTAAGTGACTCGTTTAAATCGGTGATTTATAACGGTGAATATCACCATCATCATCCACCACCTCATTGGTATTACGGCCCAAATTACAACACTACAAAATCTTTCGAATCGTTACCATCTTGTTCACAAGTTCAAGCAATTGAATCAAATTCATGCTGTCGGGATTTCAATCCCGACCCAGAAAAGGGCAACAAGTATTGTCGCATCCAATCGAGTGACAATGAAATGACCCCAAGTTCTTGCGAATTAAAAAACTTTCCAAGTTGCCAAATCAGTGGcaataatttaatgttattgGGCGGATTAGAGGAAGAACATTGCGATGTTCTACCAATGGACTGTTGTAATTCCAGTAATTTAACAACCCGTGACTTCTTTCCCTCGGCAACTGATATAAGTATTAATTTAGATTTGTATGATCGTGATGAGAATAAGGGATCAAAATCGGGGAGTCAATGTGGAAGTGATGATATAATCGTTGAGGAATCGGCCGATGGTGATGAGACTTCGTCTTCAGTTATGAGCGACGCTGAAGATGTTCCAGAAATTGTCTATGTTTGTGTTGTATGTAATTTAACGTCATCTTCAAGGTCACTCAATGAAATGAGAGCCGTGGTTTTTTTTCGGCGCCTGGACGATAAAACATTACTAACTCGAACGACTCAAACTTCGATTTTGACTAAACTCAAATCGATCACCAAGGAAGACTTTCCGAGAACTCTCGCTGATTACATCTGCAATTTATGTTTGGATTTGGTCGATACAGTCGACTGTTTCGAGTTTAAATTGAATGAAAGACGGGAACAATTAATCGGGCTTTGCCAGAAGACTAATTCAAGTCTTCAGGAAGCGACTGCGATTGTCGATTCGGTTGATACTAATTTAGAGTTGGACATTGAAAAGGAAAACGAGGGAAGTCCCGGAGAAAACTTCCAGAATAATCAACGTAGAATTTGTAagatttgtaataaatatttttgtcagaGCGATATTCATCGACATAAGCAATTGCACGCGAGTCATATCAACTTTAAATGTGCTTTATGCCATCGTAGTTTCACCATGAAACGATTGTTAGATAATCACATGAAACGGCACTATGGCCAAAGGGATTATCTTTGTGATCGTTGTGGAAAGAGTTACATTAAAAAGTATACCCTTGATTTACACATGCAAAGGCACACGAAATCATTTCgttatttttgtattgattGCAACAAAGGTTTTGTATGTAAGACAACATTGGACATCCATCAACGGACTCACACCGATTTAAAACCATATCAATGCGATATTTGCCAAAAAAATTTCCGAACTTCATCTCATTTAAAAGAACACATGAACTGTTGTTCCGGGAATTTTCCCTATGCCTGCGATCAGTGCGACAAAAAATTCGCCTCAGTCTCGAAACTGAATAATCACATCAAACTTAAACacgagaaaaaatttaaatttcaatgtgAATTTTGTTCGTCGGGCTTTACTAAAGACTCGAATTACAAAGCCCATTTAATGACTCATTCTTCTGATAAACCTCACAAATGTACGACATGTGGAAAAGCTTATAAGACCATCAGTAATTTGCACCATCATGAAAAAGTTCATAAAGACGCCTTGTTTAAATGTGAGACATGTTCTCGGGAGTTTCAACGCAAGGAAAATTGGGAGGCCCATAAAAGTGTCCATACAGGATTCAAACCATTTTCATGTGCCTTATGTGAGAAACGTTTCGCcattaaaaaacatttagatGCCCACTTGGCACGACTTCATCCTCCAAATGGAAGCacgaaaaaacaaaaatgtccTGTGTGCAACAAAGAACTGGCTCATAGTCTGGAAGAACATTTACGCTTACATTCGAAAGAAAAACCATTTAAGTGTAACGTTTGCACGATGCAATTCATAAGTTCGGGTGCTCTTAGGAAACATGTTAAAAGAAAagaacattttcaataa
- Protein Sequence
- MENNSKLYYPQLDTLPPCPNSVPPTQQPSDKQLQQDHQHRSQHFLTYAMSSNVAMSQSLIYNSQNAYNIMPYYSTPNAFPPPPTFNTYNPQLDTIPWLSDNYKSRDKEKRADSIGVSEPIGIGLLSPLSDSFKSVIYNGEYHHHHPPPHWYYGPNYNTTKSFESLPSCSQVQAIESNSCCRDFNPDPEKGNKYCRIQSSDNEMTPSSCELKNFPSCQISGNNLMLLGGLEEEHCDVLPMDCCNSSNLTTRDFFPSATDISINLDLYDRDENKGSKSGSQCGSDDIIVEESADGDETSSSVMSDAEDVPEIVYVCVVCNLTSSSRSLNEMRAVVFFRRLDDKTLLTRTTQTSILTKLKSITKEDFPRTLADYICNLCLDLVDTVDCFEFKLNERREQLIGLCQKTNSSLQEATAIVDSVDTNLELDIEKENEGSPGENFQNNQRRICKICNKYFCQSDIHRHKQLHASHINFKCALCHRSFTMKRLLDNHMKRHYGQRDYLCDRCGKSYIKKYTLDLHMQRHTKSFRYFCIDCNKGFVCKTTLDIHQRTHTDLKPYQCDICQKNFRTSSHLKEHMNCCSGNFPYACDQCDKKFASVSKLNNHIKLKHEKKFKFQCEFCSSGFTKDSNYKAHLMTHSSDKPHKCTTCGKAYKTISNLHHHEKVHKDALFKCETCSREFQRKENWEAHKSVHTGFKPFSCALCEKRFAIKKHLDAHLARLHPPNGSTKKQKCPVCNKELAHSLEEHLRLHSKEKPFKCNVCTMQFISSGALRKHVKRKEHFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -