Basic Information

Insect: Sisyra nigra
Gene Symbol: -
Assembly: GCA_958496155.1
Location: OY292318.1:35093074-35101511[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00086 0.07 13.8 2.3 2 23 127 148 126 148 0.96

2 13 1.7e-06 0.00014 22.4 0.9 1 23 151 173 151 173 0.99

3 13 0.11 8.9 7.2 2.2 1 23 178 199 178 199 0.97

4 13 0.0073 0.6 10.9 1.9 1 20 205 224 205 225 0.95

5 13 2.5 2e+02 2.9 1.0 1 23 233 255 233 255 0.88

6 13 5.9 4.8e+02 1.8 0.7 1 23 409 432 409 432 0.92

7 13 0.32 26 5.8 2.0 1 19 444 462 444 466 0.77

8 13 7e-05 0.0057 17.3 2.9 2 23 473 494 472 494 0.95

9 13 1.4e-06 0.00011 22.6 0.5 1 23 501 523 501 523 0.96

10 13 8.5e-06 0.00069 20.1 1.3 1 23 529 551 529 551 0.98

11 13 8.8e-07 7.1e-05 23.2 0.5 3 23 559 579 557 579 0.96

12 13 1.2e-05 0.00096 19.7 0.2 1 23 585 607 585 607 0.99

13 13 0.48 39 5.2 1.2 1 23 612 635 612 635 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00086	0.07	13.8	2.3	2	23	127	148	126	148	0.96
2	13	1.7e-06	0.00014	22.4	0.9	1	23	151	173	151	173	0.99
3	13	0.11	8.9	7.2	2.2	1	23	178	199	178	199	0.97
4	13	0.0073	0.6	10.9	1.9	1	20	205	224	205	225	0.95
5	13	2.5	2e+02	2.9	1.0	1	23	233	255	233	255	0.88
6	13	5.9	4.8e+02	1.8	0.7	1	23	409	432	409	432	0.92
7	13	0.32	26	5.8	2.0	1	19	444	462	444	466	0.77
8	13	7e-05	0.0057	17.3	2.9	2	23	473	494	472	494	0.95
9	13	1.4e-06	0.00011	22.6	0.5	1	23	501	523	501	523	0.96
10	13	8.5e-06	0.00069	20.1	1.3	1	23	529	551	529	551	0.98
11	13	8.8e-07	7.1e-05	23.2	0.5	3	23	559	579	557	579	0.96
12	13	1.2e-05	0.00096	19.7	0.2	1	23	585	607	585	607	0.99
13	13	0.48	39	5.2	1.2	1	23	612	635	612	635	0.96

Sequence Information

Coding Sequence: ATGGAAGCAACCGATTTCGATTTAAAACGGATATGTCGCGGCTGTAAAATGGAATCCAGTATGATGTTCTCCGTTTTCTCCGTGCTTGAACCCCAATACAACGGCTGTAATCTGGCCAAAATGTTCACGGAATGCACCTCCTTACAAGTCTCCGAAAATGATGGCCTACCAACGATGCTATGCTATGGCTGTGTCGAACAACTAAACGGTTCCTTCACCTTCAAAAAGCAATGTATAGAAACCGATTCATATCTTCGGGAATatctcaaaaataattcaatcaaaaaagAAGATAATTACACGAAAGAGATCCAAAATGAGGAAGTAAATGACGGGTCGGATGATGTTAAACCTTTGGTCAAACCCGATCAAACTATCGaatgtaaaatatgtaaaaagaatttttcacgTAGCACATTAAAAGGACATTATCGTAAATTTCATAATGTCTACAAATGTCCTAAATGTTCAGAAACGTTTCGACGACAAGCTACGTTACAGGGACATTTACAGAGTCATGAAAATAAACGTTATATCTGTACAATTTGTCATATAACTGTGTTAATGCCACATTTAAAAAGGCATTTAATGACTCATTTAAAGGTCAAACCGTTTAAATGTGAGATGTGCTCGAAAGATTTTTGTCGTGAAAAACGTCTTCGAGAACATGTCGATTGTTGTAAGGGCAAACAGCCGTACACTTGCGATCTATGTCGCGAAGGATTCCAATGTGAAGATGTACTAAAAGAGCATTTACTACAGCACGAAGCTCGCGACAATCTATGTATTTTGGATTCGATCGACAACTATCAAAATCACTACTTTGAAATCGATCGGAGTCAGTCGTCCCGAGAAGGTCCAGAATATGTTCCATCCGATTCGGAAGAAGATTCAGAGAGCAACGAGTTTCAAGTCGAAGAACTTTCCATGGAGACATTTGATTCGACCATTTGTAAAATTGAACATTTAATCGAAACAGCGAACGATGATTCTGTGAGTAGTGGGGAAATGGTCGAGGAAAATCCGGTTGATTTCGATTGTACGCCGGAGGTTATTGTGAAAGAGGAAATTATTGGTCGGGATGTGGTCGAGGAAACACCGCCGGTTAAACGTCGCGTTGGACGTCCCCGAAAAAATGACTCGACGTCAcccaaacaaaataaaacaatacgAAAACGAAAAAAGTCTAAGATAAAGACTGAGACCGAGGAAGAGACTGAAACGTTCGAGTGCGACTGTTGCAGTGAAATCTTGCCATCGAGTGAACGTCTAGCACGACATAAGTCGGTCAAACACAATATCGGGCCGAAAATAATGCCCGAGAAGAAGTTCATGTGCCAAATATGTCGGAAAGGTTTCACGACCGAGAAATATCGAGATTTTCACTTGAAATCGCACGAGAATGAAAAAGCGTGTATGTGTAAAACGTGTGGTAAAGGGTTCCGGTCGCGGGCTCAACTCAACGAGCACGTCAAGTTTCATGATGAGTGTGCGAAAAAGTTTTTGTGCTCCGAATGTGGGCAGAGGTTCATCCGGAACGACTATCTTGTGATACATATGCGACGACATCGTGGCGAAAAACCGTTCAAATGCAAATTTTGTGGCAAAGgaTTCCCACGGACGACAGATTTAACCGTTCACGAAAGATATCATACAGGGGAAAAGACGCATTTGTGTGTGATTTGTGGACGAGGATTTGGAAGggcGTATAATCTAACAGTGCATATGCGCACGCATACGGGTGAAAAGCCGTACAAGTGCACGTACTGCGACGCTGCATTCGCTCAGGGCAACGATTTGAAGGCGCATGTGCGTCGACATACGGGCGAGCGTTACCACTGTGATATTTGCTACGAGGGCTTTCTCATGGGCTATTTACTGACGCAACACAAACGGACCGTGCACGGTCTCGACGTGAAATCGCACATTCGTCGACTGAAACCGTACGAACGTTTCACACCCGAGTCCCAACGAATGCCGGAAAAGCCAACACTAGGTGCAACCACCACTCAACTACAGCTAGCCCTACACAACACAACCGTTTTGAATATTCCCGGTGGAGTCAGCGAACAAAGCACGCCCTTGTCAGAATCAGTTATTCCCGACACACAATCGTTTCCTGTTATATCGACATCGGCAACCGATTCTCTAGCATAA
Protein Sequence: MEATDFDLKRICRGCKMESSMMFSVFSVLEPQYNGCNLAKMFTECTSLQVSENDGLPTMLCYGCVEQLNGSFTFKKQCIETDSYLREYLKNNSIKKEDNYTKEIQNEEVNDGSDDVKPLVKPDQTIECKICKKNFSRSTLKGHYRKFHNVYKCPKCSETFRRQATLQGHLQSHENKRYICTICHITVLMPHLKRHLMTHLKVKPFKCEMCSKDFCREKRLREHVDCCKGKQPYTCDLCREGFQCEDVLKEHLLQHEARDNLCILDSIDNYQNHYFEIDRSQSSREGPEYVPSDSEEDSESNEFQVEELSMETFDSTICKIEHLIETANDDSVSSGEMVEENPVDFDCTPEVIVKEEIIGRDVVEETPPVKRRVGRPRKNDSTSPKQNKTIRKRKKSKIKTETEEETETFECDCCSEILPSSERLARHKSVKHNIGPKIMPEKKFMCQICRKGFTTEKYRDFHLKSHENEKACMCKTCGKGFRSRAQLNEHVKFHDECAKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCVICGRGFGRAYNLTVHMRTHTGEKPYKCTYCDAAFAQGNDLKAHVRRHTGERYHCDICYEGFLMGYLLTQHKRTVHGLDVKSHIRRLKPYERFTPESQRMPEKPTLGATTTQLQLALHNTTVLNIPGGVSEQSTPLSESVIPDTQSFPVISTSATDSLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -