Basic Information

Insect
Sisyra nigra
Gene Symbol
-
Assembly
GCA_958496155.1
Location
OY292318.1:23324064-23328567[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.00064 0.052 14.2 2.0 1 19 139 157 139 159 0.95
2 8 7.7e-07 6.3e-05 23.4 1.0 3 23 177 197 175 197 0.97
3 8 1.7e-06 0.00014 22.3 1.7 1 23 203 225 203 225 0.94
4 8 1.1e-07 8.8e-06 26.1 1.5 1 23 231 253 231 253 0.99
5 8 9.4e-05 0.0077 16.9 3.0 1 23 259 281 259 281 0.98
6 8 0.0001 0.0085 16.7 0.4 1 23 287 309 287 309 0.98
7 8 0.00065 0.053 14.2 0.8 1 23 315 337 315 337 0.93
8 8 6.4e-06 0.00052 20.5 2.9 1 23 343 366 343 366 0.96

Sequence Information

Coding Sequence
ATGAACGATGAAACGTGCCCACAATGCCTACGTCCCTTGTCTGGATATTCTTTACGATTAGTTCAAGATTCATGTGGCCATAAAAAATGTCGAATGTGTCTGTTGCTCGATGAAAACGGATGTCGCACGTGTGAAATAAATGCCTTTGAAAACCCtagtaaatcaaaaaatgacGAACCTCTAGAAAGTCTTCCTAAAGAAAATCCTATCCCAAGCCAAATTGAATCCCAACCGATTCCAGAAAATGATCAAATTGCCTGTTCATATCATGCCGAACAAATTGAAGCTCCCGATGAAGAATTGCCTCAGGAAGTTATAAAACAAACAAGCGATTCGGTCAGTTATATTGAAACACAGTCAAATTCAGACCAACTTCCGtctcatataacaatttttcaaaaaagccCAATTACATTCCAGTgccaaaaatgtaataaaatattttctagtcGATTTCAAATCAAGCGGCATTCGAACTGTGGTGTGATCGcttcaagtgaaaataatacaataaacaAGAATCTTGCATGTAAAGAATGTGGGCAGCAATTTGCGAGAAAATCGCATCTTGAATGGCATGTGAGAAGACACACTGGGGAAAGACCCTTTGTTTGTTCAATTTGTACCAAGTCGTTTACTCAAAAATCCAAGTTAAATCGTCACTCAATACTCCATACTGACAACAAACCGTACGAATGTAAGGTGTGTGAGAAGAAATTTCGCACGAAAGACGGTCTTCAAAATCACATTAAAACTCACACCGGTGAAAAACCATTCAAATGCTCCAAATGCACGTCTCGATTTTCAGAACTTTCTAACTTGAAGAAACATCAAACTGTTCATAcaaaggaACGGCCGTTTATGTGTTCTGATTGTGGGGCTCGATTTAGTCTCAAATGGCGACTTACAGTTCACACTCGAGTTCATAGCCGTGAAAGACCTCATATTTGCTCGCAATGTCCCCGTGGCTTTAACAACATGAAAGATCTTCGTCGACATGAAGTTATTCATTCTGATGTCAAACCATTTTCGTGCAAGTATTGCAGTACGCTCTTTCGCAGAAAGGACAATTTAGAAAGACACATTAAAAACACCCACTTAGAAGCTGGTGGAAAATCAGCTGAAAAACATTTCGCATCCAATTCGAGTCAATCTGTTTCGAACAGCAAACCGAAAAAGACTGAAAAAGTAGCTAGTGATAAAAACTCCATTTTACTGCcagaaaacaataatttatccGTCATTGAATCGACCAATAATATCGAAAAGTTGATATTCAACTCTCAAAAGTCTGTTATAACTCTACGTGATTCCTACTTAAACGATACTGCATTACCCATTTCTTCAGTTGATGATAAGCCAAAACCGAATGCTGTTTCAGTTATAAATGGACCTGTAAAATTAGCCTTGAAAACGAAGGCTTTCAAAACTAACTACAATATCAAACGAAAAGAACTTGATGTAGATCACAACGTTGATATTTACAAAAGGATTTTATCCCCGATGACATCGTCGAAAccaaaagataaaaacatagAGGTTCCGATACGAAATCCTGATAgtataataaaatcattaaactcAATAAATGAACCAAATAATGATCTTATCAAGCACAAAATGGCCCCAATTTCGGTCCCACGAATACACTATGAAACGTCCTTCGAAAACGGGCAGCACgccattataaaaaatatcaaatttaaattgcCACCCGATTATACGGCACGGCTTTCCAAGTTTAATTCGCAGTTGAATGAATCGGCGACAGATCGCATTGATTCGAATGAAAATGAAGTCTTGGAATATCCGGCAGGTGGAAACTATGATAATCAAACGTATACAACATTGACCCCGGTTCAGTTTGACCATTTTGTGCAAGATAAGGACAATTGTGTGAGAACAATAACGAAAAATTCGACTGTGTCAAATCAGTCTACGATTGAGTTTGGTAATTTTCAAGATGAAGAAAGTTATATTATGAAAGATACACATTGGCGACGAAGAACTTCACAAATTTTACAGCCAAAACTAAACAATTCGTACTAG
Protein Sequence
MNDETCPQCLRPLSGYSLRLVQDSCGHKKCRMCLLLDENGCRTCEINAFENPSKSKNDEPLESLPKENPIPSQIESQPIPENDQIACSYHAEQIEAPDEELPQEVIKQTSDSVSYIETQSNSDQLPSHITIFQKSPITFQCQKCNKIFSSRFQIKRHSNCGVIASSENNTINKNLACKECGQQFARKSHLEWHVRRHTGERPFVCSICTKSFTQKSKLNRHSILHTDNKPYECKVCEKKFRTKDGLQNHIKTHTGEKPFKCSKCTSRFSELSNLKKHQTVHTKERPFMCSDCGARFSLKWRLTVHTRVHSRERPHICSQCPRGFNNMKDLRRHEVIHSDVKPFSCKYCSTLFRRKDNLERHIKNTHLEAGGKSAEKHFASNSSQSVSNSKPKKTEKVASDKNSILLPENNNLSVIESTNNIEKLIFNSQKSVITLRDSYLNDTALPISSVDDKPKPNAVSVINGPVKLALKTKAFKTNYNIKRKELDVDHNVDIYKRILSPMTSSKPKDKNIEVPIRNPDSIIKSLNSINEPNNDLIKHKMAPISVPRIHYETSFENGQHAIIKNIKFKLPPDYTARLSKFNSQLNESATDRIDSNENEVLEYPAGGNYDNQTYTTLTPVQFDHFVQDKDNCVRTITKNSTVSNQSTIEFGNFQDEESYIMKDTHWRRRTSQILQPKLNNSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-