Basic Information

Insect
Sisyra nigra
Gene Symbol
wdn
Assembly
GCA_958496155.1
Location
OY292315.1:55374073-55377224[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 6.2e-05 0.005 17.4 0.6 2 23 223 245 222 245 0.97
2 10 0.73 59 4.6 5.9 1 19 251 269 251 273 0.90
3 10 0.00091 0.074 13.8 2.8 1 23 279 302 279 302 0.92
4 10 5.5e-07 4.5e-05 23.9 0.1 1 23 308 330 308 330 0.99
5 10 1.3e-05 0.001 19.6 0.0 1 23 338 360 338 360 0.98
6 10 5.1e-07 4.2e-05 24.0 1.0 1 23 366 388 366 388 0.97
7 10 1.2e-05 0.00094 19.7 4.4 1 23 394 416 394 416 0.96
8 10 0.00082 0.067 13.9 3.1 1 23 422 444 422 444 0.97
9 10 0.028 2.2 9.1 5.1 1 23 450 472 450 472 0.97
10 10 1.3e-05 0.001 19.6 3.7 1 23 478 501 478 501 0.98

Sequence Information

Coding Sequence
ATGAGACACCGCGAATCGTCCGCGCCGCCCGAGGTGAAAATCGAGATCAAAAACGAGTGCAGCATTGATATCAAAGATGAAGATCTCGACGTGTTCTCACTCGAAATTCCCTTGGACGAGAATTTCGTCGCGTCCGACGAAGAAAAGAAACCGATTGAACACTACGACGAAGATACGCTACTAGATGCCGAATCGTATAAGGATAGTTCGTTTTTTATACGACAACGACGTCGAAAGGCTTTACAACCACAACGAGCGTCGTCCACTGAGGATGAGTTATCTCGTACTCTGTTTGCCGAGAATACTTTGGACATTTCGTCCCAGTCAACCAATCCTGGTAGTGAGGACGAGTTGCAAGAAATCGAGTTGGAGTTGGAAATGGAAATGGCGAGCAACGACGAAGATGATATGGATGAAGATGTAATTGAAGGCGAAACCGAACCGTCACGGGACAGTGAAAGTCATTCATCCCGAATTTCCAACGAAAATGGTTACACCGCCGAAGATGAAGAACTGGAAGAAGACGACGGAATTGACGAACCGCCCGATATGGAAACCGACGACGTTTTCAAGGGCTTAAAAGAAGAAGCCGttggaGAAGGTGAAGAGTTAGACGAAAAAACGCATAAACGAGCTGAGGAGGAATGGAAAGCGCACTGGGGTGTGAAATGCAATATGTGCAACAAAGTTTTCCCTCAAAAGGCTGCGTTTGATGACCACTAtcgtaaaaatcacaaaacaaaaCCAGTTTATACGTGCTCGTATTGTGATAAGAGCATGGTTAAGTATTCGACTTTTCGATCTCATTGCTATCGACATATCGCCGAAGGACGATTTAAaTGTAGTTACTGTACGAAAGCGTTTAGTTTACGAAGCATGTTGCACTTGCATAAAATCGCTCGACACACCGACATCAAGCCGTATGTATGCGAGGAGTGCGGAAAAGGTTTTGTGACACGTGCCGGCCTTAATATGCATCTACGTAAACATAAACCGAATCAAAAGGAAGACTATCCGTGTGGTGAATGTGGCAAAACGTTGCAAACTCGTGGTGGTTTAACGGCTCATATGAACGTCCATCGTCAGGGCAGGCGTTTCATGTGCGATATTTGTGGCAAAACGTTCACACAAAAGGTCAACATGCAACAGCATGTCAAACAACATACAGGTGAACGTCCGTTCACCTGCGATCAATGTGGGAAAAGttttgccGAGAAATCGCATCTTGCACGTCATCATAGTTTTCATACAAATTTCCGGCCGTATCGATGCAACGTTTGTAATCGAATGTACAAGACTGAGCGTTGTTTGAAAGTGCATTCTTTGGTGCATGCGGCGACTCGACCCCACGTCTGTTCATATTGCAGCAAAGGCTTCTTGAGCagtacaaaattaaaacAACATCATAATATTCATACGGGTGAGCGGCCGTTCAAATGCAAATATTGTGAGAAGACGTTCACCAATTATCCGAATTGGTTGAAGCACACGCGTCGAAGACATAATGTCGATCACAAAACGGGCCTTGGTTTGGCCGTCAAGCAAGAAAATGAAACGTTAACCAGTTCCACGCCAACGACTGCATCGACCGTGGTGTCCTCGAGCGCAACATTGACGCAAATGTCGCTCCCTATTCCAATGGCGACGACTTCAACTACCTTACTGCAACCAGCTGCGATTGCAACGTCGAATCTCGTCGACGATGTCAATGAAGTGCCACTGGTCGATCCACTTTTGCTTGAGTACCCCTTGACCGATCAGAGCTTGTTGACGACCACTGTACAACAACTAGTCGGAGACGAGGCTAAACTAAATATGGCATCTCAATTATTTCCACCATCTACATTCGACATCATATCGaCCACTGGTTATACGAACATGGGATTGATGTTACCATCGTATCAAACACCAACAACCAGTGTCAACAACCACCACCACGTCGCTGATCTTCTAGAACAGGCACAGCCTCAACCtcatcatcaaattttgattcaaCCAGCGGCGTTGCAAGACCAAAACGAAGCATTCCCAGCTCATCAAACTCCACTTCTTTACCAGGAACACATCCACTTTATCCACACCCAGCAAATGCTGCAAATGTGA
Protein Sequence
MRHRESSAPPEVKIEIKNECSIDIKDEDLDVFSLEIPLDENFVASDEEKKPIEHYDEDTLLDAESYKDSSFFIRQRRRKALQPQRASSTEDELSRTLFAENTLDISSQSTNPGSEDELQEIELELEMEMASNDEDDMDEDVIEGETEPSRDSESHSSRISNENGYTAEDEELEEDDGIDEPPDMETDDVFKGLKEEAVGEGEELDEKTHKRAEEEWKAHWGVKCNMCNKVFPQKAAFDDHYRKNHKTKPVYTCSYCDKSMVKYSTFRSHCYRHIAEGRFKCSYCTKAFSLRSMLHLHKIARHTDIKPYVCEECGKGFVTRAGLNMHLRKHKPNQKEDYPCGECGKTLQTRGGLTAHMNVHRQGRRFMCDICGKTFTQKVNMQQHVKQHTGERPFTCDQCGKSFAEKSHLARHHSFHTNFRPYRCNVCNRMYKTERCLKVHSLVHAATRPHVCSYCSKGFLSSTKLKQHHNIHTGERPFKCKYCEKTFTNYPNWLKHTRRRHNVDHKTGLGLAVKQENETLTSSTPTTASTVVSSSATLTQMSLPIPMATTSTTLLQPAAIATSNLVDDVNEVPLVDPLLLEYPLTDQSLLTTTVQQLVGDEAKLNMASQLFPPSTFDIISTTGYTNMGLMLPSYQTPTTSVNNHHHVADLLEQAQPQPHHQILIQPAALQDQNEAFPAHQTPLLYQEHIHFIHTQQMLQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01349897;
90% Identity
-
80% Identity
-