Basic Information

Insect: Sisyra nigra
Gene Symbol: -
Assembly: GCA_958496155.1
Location: OY292313.1:39050539-39055797[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00015 0.012 16.2 0.6 3 23 270 290 269 290 0.97

2 9 8.2e-06 0.00066 20.2 1.8 1 23 310 332 310 332 0.97

3 9 0.016 1.3 9.8 4.1 1 23 421 443 421 443 0.96

4 9 1.1e-05 0.00088 19.8 0.2 1 23 449 472 449 472 0.97

5 9 9.1e-06 0.00074 20.0 0.2 1 23 478 500 478 500 0.98

6 9 8.6e-07 7e-05 23.3 0.5 1 23 506 528 506 528 0.98

7 9 0.00012 0.01 16.5 1.1 1 23 534 556 534 556 0.97

8 9 1.7e-06 0.00014 22.3 1.9 1 23 562 584 562 584 0.97

9 9 8.1e-06 0.00066 20.2 1.8 1 23 590 613 590 613 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00015	0.012	16.2	0.6	3	23	270	290	269	290	0.97
2	9	8.2e-06	0.00066	20.2	1.8	1	23	310	332	310	332	0.97
3	9	0.016	1.3	9.8	4.1	1	23	421	443	421	443	0.96
4	9	1.1e-05	0.00088	19.8	0.2	1	23	449	472	449	472	0.97
5	9	9.1e-06	0.00074	20.0	0.2	1	23	478	500	478	500	0.98
6	9	8.6e-07	7e-05	23.3	0.5	1	23	506	528	506	528	0.98
7	9	0.00012	0.01	16.5	1.1	1	23	534	556	534	556	0.97
8	9	1.7e-06	0.00014	22.3	1.9	1	23	562	584	562	584	0.97
9	9	8.1e-06	0.00066	20.2	1.8	1	23	590	613	590	613	0.95

Sequence Information

Coding Sequence: ATGGAGCAAACAACAATTCAAATAGTTCCAGAATCTGAAATCCATTCAGCTATTAGTGAAACAGACCAAATCATCGAAATAACAGACGTTGGGATAATTGGGTTGGATTCGTTATGTCGTTTGTGTTCTAATCGCAGTGATAATTTGATTTCAATATATGAAGGAGAAGGATTAGAGTATCAATTGCAATACAAGATGAATCAATATTTGCCATTTCAAGTGGAACAAGTAGACTCCATGCCGAATCATTGCTGCTATCAATGTGCTAGTACGTTGCTTAGTTGGCATGAACTGTACGAAACTAGTATGGAAGCGGATAGAAGACTTAAAGCATTGCAGCAAGATTTGCAGAGAATATCCATCTATGAAGAACAAGAAGCTCAGACGGTCGTAGAAGAACCTACTGAAAATTGCATAACAATAACGACATCTCCGGATCAGAGGGTTGCGCAGTCCCGAGCACCCGGTTTCTTATCATTCCGCCAAGCACAAACTAATTTTATCGTTGAATATTTAACACaatgtataaaacaaaataacgaGGCCATACAGTCAATCAATTTGAAACTTGAGACAGTAGACGATTTTGGAACATTTGAACCTTCCATAAATATAAGCCAAAATCATATAAAACCGGAGCCATCAAAAGACTTCTTATTAACTAACAATACCATAAGTGGACTCGATGATTCTTGTTTATCACTTATAGAAATTAATCCAAAAGAGAATAAAACTCAAGACAAAACAATAACGAAGACAAAAacgaaaattcgaagtcgtaaAAAAACGCCCAATTCAAAACCATTTTGttcaatttgtaaaattatattcaagCGACCGATTGATTTAAGAAGACATTCAAAGATTCATttaaactcaataaaaaatacTACTACTAAAAAGGAAGATATAAATTCAGTGAAATTGTTCGTttgtaaattttgtaataagCATTTTGAGGATAATGCAGATCTCCAAAAACATATTGTTTCCCATAGTGACgaaaaatttctaagaaataaGTGCAATCGGTTTAAAAATTCGGATTTCGACGATACAAATAATATAATCACCGCTACTGATATGATAGACAATTCGAAAATAAAAGATGAGGATTCATCGGATGATGTAGATTTCACCGATAAAGGAGAAACGCAAAAAGTTCATACAGCCTTAAAAACGAATAAGTTGATTTGCCGAAATAAACTTAATAAAGATGAGATCGAGCAAGCAAGAATTATCATTGATAAACGAACATATTATCAATGTAAAGAGTGCGGAAAAAATTTGCATAGCCCTTATACGTATATGTGGCATTGTCGAATTCACACAGGTGAACGTCCCTATGTCTGTGACCTATGTGGTAAGCAATTTCGCGTGTCACAAGGTTTAGTGCGGCATTTACGCGAAACTCATGCGGGAATTAAAAATTTCCCTTGTGATTTGTGCGGTCGTATGTTTGCTACTAGACGAAACGTTGAAGAACACAGAAGAATACACACCAACGAACGGCCGTATGTGTGCGATTTGTGTGGTAAAGCATTTAAACAAAAAGCGTCGTTATTTGTGCATAACCGATCTCATACAGATAGTTTTCCTCATAAATGTAGTTACTGTGGACAAGGATTTAGAACTAAACCTCCACTGATGATACATGTTACGCGACATACTGGAGAAAAACCATTTCCTTGTGAAATTTGTGGCAGGTGTTTCCGAATTAAGTATGAACTTAAAAGACATCGTCTAATACATTCTGATGAAAAACCATTTAGTTGTACAGAATGTGGTATTTCATTTAGACAAAAAAGATATCTACGTAATCATAATAAAATCAATCATAATAGTCGTATTACTATTTGA
Protein Sequence: MEQTTIQIVPESEIHSAISETDQIIEITDVGIIGLDSLCRLCSNRSDNLISIYEGEGLEYQLQYKMNQYLPFQVEQVDSMPNHCCYQCASTLLSWHELYETSMEADRRLKALQQDLQRISIYEEQEAQTVVEEPTENCITITTSPDQRVAQSRAPGFLSFRQAQTNFIVEYLTQCIKQNNEAIQSINLKLETVDDFGTFEPSINISQNHIKPEPSKDFLLTNNTISGLDDSCLSLIEINPKENKTQDKTITKTKTKIRSRKKTPNSKPFCSICKIIFKRPIDLRRHSKIHLNSIKNTTTKKEDINSVKLFVCKFCNKHFEDNADLQKHIVSHSDEKFLRNKCNRFKNSDFDDTNNIITATDMIDNSKIKDEDSSDDVDFTDKGETQKVHTALKTNKLICRNKLNKDEIEQARIIIDKRTYYQCKECGKNLHSPYTYMWHCRIHTGERPYVCDLCGKQFRVSQGLVRHLRETHAGIKNFPCDLCGRMFATRRNVEEHRRIHTNERPYVCDLCGKAFKQKASLFVHNRSHTDSFPHKCSYCGQGFRTKPPLMIHVTRHTGEKPFPCEICGRCFRIKYELKRHRLIHSDEKPFSCTECGISFRQKRYLRNHNKINHNSRITI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -