Basic Information

Insect: Sisyra nigra
Gene Symbol: -
Assembly: GCA_958496155.1
Location: OY292317.1:41436098-41437668[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.3e-06 0.00043 20.8 1.9 2 23 136 157 136 157 0.97

2 11 8.1e-06 0.00066 20.2 0.4 1 23 163 185 163 185 0.97

3 11 8.5e-08 6.9e-06 26.4 1.2 1 23 191 213 191 213 0.99

4 11 2.3e-05 0.0019 18.8 0.5 1 23 219 241 219 241 0.97

5 11 0.45 37 5.3 0.1 2 23 247 268 246 268 0.90

6 11 4.4e-05 0.0036 17.9 1.4 1 23 323 345 323 345 0.97

7 11 1e-05 0.00085 19.9 1.7 1 23 351 373 351 373 0.97

8 11 6.6e-05 0.0054 17.3 0.3 2 23 380 401 379 401 0.97

9 11 0.00023 0.019 15.6 1.6 1 23 407 429 407 429 0.97

10 11 0.00014 0.011 16.3 1.9 1 23 433 457 433 457 0.99

11 11 0.00026 0.021 15.5 1.0 1 23 464 487 464 487 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.3e-06	0.00043	20.8	1.9	2	23	136	157	136	157	0.97
2	11	8.1e-06	0.00066	20.2	0.4	1	23	163	185	163	185	0.97
3	11	8.5e-08	6.9e-06	26.4	1.2	1	23	191	213	191	213	0.99
4	11	2.3e-05	0.0019	18.8	0.5	1	23	219	241	219	241	0.97
5	11	0.45	37	5.3	0.1	2	23	247	268	246	268	0.90
6	11	4.4e-05	0.0036	17.9	1.4	1	23	323	345	323	345	0.97
7	11	1e-05	0.00085	19.9	1.7	1	23	351	373	351	373	0.97
8	11	6.6e-05	0.0054	17.3	0.3	2	23	380	401	379	401	0.97
9	11	0.00023	0.019	15.6	1.6	1	23	407	429	407	429	0.97
10	11	0.00014	0.011	16.3	1.9	1	23	433	457	433	457	0.99
11	11	0.00026	0.021	15.5	1.0	1	23	464	487	464	487	0.95

Sequence Information

Coding Sequence: atgaattttaatcaaACTTGTGAAGAATTTAACCAAATCTGTCGTCTATGTACTAAGACAAATCGAAAACTTTACGATATTTATTCTAAACATGAAGAATTAAACTGTTTGATATCCGAGGCTGTAATGGAGTGCGTTCCAAttcatttgtcgATTGATGATGGACTACCAGCATTCATATGCAGCCAATgcacttataaaatttgtttcttcAACGATTTTCGTATGGTATGCATGGATTCTGATATGGTTCTTCGAGAGTATCAAAATACGATTCTTACCAATAATCAGTTAGAATCAGTAAATAAAGAAAGTTTAAATATCACTCCGAATATTTTATCTCCTAGTGGGTTAGACGAAAAACCTGAACAGATCGAAACTAGAAAATCGTGTGAAAATCCTCCCAGTTGCGAGAAATGTCGTATGACCTTTGTAAGTCGAACGAATCTCATTCGACATTTACGTACGCATAGCGGCGAAAAACCATTCAGTTGTgaaatttgtaacaaaaaattCGCGACTCAGGCGTATGTTAAATCGCATATGGTTATTCATACGAAAGAACGTAAATATTCGTGTGAAATGTGCGGAAAAACGTTCATGTTTAATAGTGACCTAACGATTCACATGCGAAAACATACCGGAGAACGTCCCTATGTATGTGAAACATGTGCTAAACGATTCGTTTCATCAAGCGCCCTAAATGCACATCGTTTTAAGCATGGTcccaaaagatttttttgtattgtCTGTGCCAAAGGATTCATATATAAACTCGAATTGGACTCGCATATACTAATTCATCGTAAAGacacatttattattaaagaCGGTGAAAATATCACGAATGAAATCAAAGCCGAAATCACTGATATCACATGTAATAAATCACGAGATCCCATTGAAATATCTCGATCGAAATACGATCAATATTTAACTCTGGTCGAGAAATTGGGCAAAGGAACTTTTGTTTGTGATGTTTGTGATAAGATTTTATCGTCTTGTAGTAATCTATATAGACACAAATTGATTCATACAGGACTTAAACGACATATGTGTGAAATTTGCGGGAAAGGATTTAAAGTGAAAACGGATTTAACTGATCATAAAAATCGACATTTGGGAATAAGAAACATTCAGTGTGAGTTTTGTCCGAAGATGTTTGCCTCACGAAGCGATTATGGGAAACATGTTTCGACCCATATGGACCATAAACCGTTTGTTTGCGATCTATGTCCCAAATCGTATTATAACGTATATGCATTGAATCACCATAAAAAAGAGCATCAATATCCCTTTAAGTGTAAACACTTGGGGTGTCTGAAGGCCTATCCCAATGAGGAGAAATTAAATCGACATTTACGAACTCATGATGAAAGTAAACGTCGATTTAATTGTGGTAGTTGTGATAAGATTTTTACGAGTATTCAATCGTTAACGAGACATAGTCGAAATCTGCATTCACTAGCTGAAAATCCAATGGAAGGATTGGAgataggggaaaggtgtacaagatga
Protein Sequence: MNFNQTCEEFNQICRLCTKTNRKLYDIYSKHEELNCLISEAVMECVPIHLSIDDGLPAFICSQCTYKICFFNDFRMVCMDSDMVLREYQNTILTNNQLESVNKESLNITPNILSPSGLDEKPEQIETRKSCENPPSCEKCRMTFVSRTNLIRHLRTHSGEKPFSCEICNKKFATQAYVKSHMVIHTKERKYSCEMCGKTFMFNSDLTIHMRKHTGERPYVCETCAKRFVSSSALNAHRFKHGPKRFFCIVCAKGFIYKLELDSHILIHRKDTFIIKDGENITNEIKAEITDITCNKSRDPIEISRSKYDQYLTLVEKLGKGTFVCDVCDKILSSCSNLYRHKLIHTGLKRHMCEICGKGFKVKTDLTDHKNRHLGIRNIQCEFCPKMFASRSDYGKHVSTHMDHKPFVCDLCPKSYYNVYALNHHKKEHQYPFKCKHLGCLKAYPNEEKLNRHLRTHDESKRRFNCGSCDKIFTSIQSLTRHSRNLHSLAENPMEGLEIGERCTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -