Basic Information

Insect: Sisyra nigra
Gene Symbol: -
Assembly: GCA_958496155.1
Location: OY292313.1:30561699-30566992[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 9.3e-05 0.0076 16.9 5.7 1 23 196 218 196 218 0.98

2 11 0.00021 0.017 15.7 8.1 1 23 224 246 224 246 0.95

3 11 0.00018 0.014 16.0 6.1 1 23 252 274 252 274 0.98

4 11 0.00042 0.034 14.8 1.6 1 23 280 302 280 302 0.95

5 11 7.8e-05 0.0064 17.1 0.8 1 23 308 330 308 330 0.96

6 11 7.6e-06 0.00061 20.3 0.1 1 23 336 358 336 358 0.98

7 11 0.00012 0.01 16.5 1.3 1 23 363 385 363 385 0.97

8 11 5.6e-07 4.6e-05 23.9 0.4 1 23 391 413 391 413 0.98

9 11 0.00034 0.028 15.1 0.2 2 23 420 441 419 441 0.96

10 11 0.0025 0.2 12.4 3.4 1 23 494 516 494 516 0.96

11 11 0.00017 0.014 16.0 5.1 1 23 526 548 526 548 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	9.3e-05	0.0076	16.9	5.7	1	23	196	218	196	218	0.98
2	11	0.00021	0.017	15.7	8.1	1	23	224	246	224	246	0.95
3	11	0.00018	0.014	16.0	6.1	1	23	252	274	252	274	0.98
4	11	0.00042	0.034	14.8	1.6	1	23	280	302	280	302	0.95
5	11	7.8e-05	0.0064	17.1	0.8	1	23	308	330	308	330	0.96
6	11	7.6e-06	0.00061	20.3	0.1	1	23	336	358	336	358	0.98
7	11	0.00012	0.01	16.5	1.3	1	23	363	385	363	385	0.97
8	11	5.6e-07	4.6e-05	23.9	0.4	1	23	391	413	391	413	0.98
9	11	0.00034	0.028	15.1	0.2	2	23	420	441	419	441	0.96
10	11	0.0025	0.2	12.4	3.4	1	23	494	516	494	516	0.96
11	11	0.00017	0.014	16.0	5.1	1	23	526	548	526	548	0.97

Sequence Information

Coding Sequence: ATGGCTATCAAAGACATTCAAGATTTATTAGTGGAAGAAGAAGTTGACGAAGGGGATTTGATGGAAATGGCATCCCTAGATGCAAATCGAATCGATTTTGAGGACGCTAGCTTTGATGAAGGAGCGGTTCGTCAGTTGACTGAGATGGGAACAGCTACAAATGTTGCAACATCATTTGGTTATTGGCATCCTGGAGAAAGTCAGCGAGCAGAACCCGTATTAGATATTCCAACCCATTTAAATTATGCGAATGCTTTGCAGGACGTAACTAAATTGAAATCAGTGCGTCGACCAGTATTTCTAATGAACGATAAACAGACCCACGACCTTTTTGGGATCGCGTGCGACAAAAATTGCTCGTGCGATGGAAATGATTCGTCAAAGCACTTCATGACACCTCTGGGCCCGCTGCAGTTGACGGCCGAGGAATGCAATGAGATCATGTTAAAGCGTGCAGCGGCCGCTGCAACGCAGACTACGGGCCTACAGATTGTTCAAAACATACAAGTCTCGCCACCGGAAGATACACTCGACATAAAGGACATAAAGCCGTTGAAAAATGTCACACCACCGAAGGATCGACCCTATCCATGTCATGAGTGTGGCAAATCATTTCTACTCAAACATCATTTGACCACGCATCTACGCGTGCACACGGGCGAGCGGCCCCACGCGTGTCCACACTGTGGCAAAGCCTTCGCTCACAAACATTGTCTCAACACTCATCTCCTCTTGCACAGTAGCGAAAGACCATACCAGTGTCTTGaatgtaaaaaaagtttcacccTAAAGCACCATCTACTGACACATTCACGTGTGCATAGTCGGGACAGGCCATTTGTCTGTGCAGAATGTGGTCGAACGTTTCCGCTAAAACGTCATCTTGTTACACATTCAAAGTTTCATGCTGGTGAAAGACCTTTCGTATGTACTGTGTGTGGAGAATCATTTGCTCTTAAGGATCATCTGGTAATGCATTCACGTTTTCATGGATCTCTAACACCGTTTGTTTGTCCCGACTGCGGGGCAACATTCCAACGTAAATTTGAGCTAGTAAATCACGCTCGGTTACATGGAAAAGTGCCACATTCTTGTCCTGTTTGCAATAaggaatttttacaaaaacggACACTAGTTGTTCATATGAGGTTGCATAATGGAGATCAGCCGTTTGTATGTTTACAATGTGGGGAAGCTTTCCGAACAAAATCCGATTTGACTCAGCATGCTAAGACTCACACACCCGGTAAGCCCTTAGTGTGTGGGGAATGCGGCAGCTGTTTCAACAGTCGCGAAGCCCTGGCTCTTCACGTGCGTTTGCATTCGGGCGACAAAGCCTTTGTAACCGATTTGTGTATGTTGACAGCCTCGCTACAAAACACACAACACTTTCAAACGCAGCATCTCAATCAAACTAATCTCTTGAACAACACACAAAACAACTCGCATCATAACCATACAACAGTGAAGCCGAAGCCCCACATTTGCGCCCATTGTGGAAAAGCGTTCGCCGCCAAGCACGGTTTGTTGCAACACAACAAACGCCATCCGGATGGAAGTTGTACTTTGCGCACGCACGTGTGTGAAACATGCAACAAAGCCTTTTTCCAGAAAAATCACTTGCTGCTGCACCAGAGACAACATTTGGAAAATACAAGACATTCGTCAGCCTCGTCGTCGGTTATAATAGCACAGCAATCACAACAAGTAATACAACAAGTACCGCAACAGCAACCTCAGCAGCAAGTGCAGCAACAAACTGTTCAAGTCCAAGCCACAACCAGTAGTTAG
Protein Sequence: MAIKDIQDLLVEEEVDEGDLMEMASLDANRIDFEDASFDEGAVRQLTEMGTATNVATSFGYWHPGESQRAEPVLDIPTHLNYANALQDVTKLKSVRRPVFLMNDKQTHDLFGIACDKNCSCDGNDSSKHFMTPLGPLQLTAEECNEIMLKRAAAAATQTTGLQIVQNIQVSPPEDTLDIKDIKPLKNVTPPKDRPYPCHECGKSFLLKHHLTTHLRVHTGERPHACPHCGKAFAHKHCLNTHLLLHSSERPYQCLECKKSFTLKHHLLTHSRVHSRDRPFVCAECGRTFPLKRHLVTHSKFHAGERPFVCTVCGESFALKDHLVMHSRFHGSLTPFVCPDCGATFQRKFELVNHARLHGKVPHSCPVCNKEFLQKRTLVVHMRLHNGDQPFVCLQCGEAFRTKSDLTQHAKTHTPGKPLVCGECGSCFNSREALALHVRLHSGDKAFVTDLCMLTASLQNTQHFQTQHLNQTNLLNNTQNNSHHNHTTVKPKPHICAHCGKAFAAKHGLLQHNKRHPDGSCTLRTHVCETCNKAFFQKNHLLLHQRQHLENTRHSSASSSVIIAQQSQQVIQQVPQQQPQQQVQQQTVQVQATTSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01349882;
90% Identity: iTF_01349882;
80% Identity: -