Basic Information

Insect: Sisyra nigra
Gene Symbol: -
Assembly: GCA_958496155.1
Location: OY292313.1:50711247-50716545[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.056 4.6 8.1 2.9 1 23 235 258 235 258 0.94

2 10 0.00017 0.014 16.0 0.1 1 23 264 287 264 287 0.95

3 10 6.5e-06 0.00053 20.5 0.3 3 23 295 315 293 315 0.97

4 10 9e-08 7.3e-06 26.4 1.6 1 23 321 343 321 343 0.98

5 10 5.1e-07 4.1e-05 24.0 0.4 1 23 349 371 349 371 0.97

6 10 3.5e-05 0.0029 18.2 1.9 1 23 377 399 377 399 0.98

7 10 0.0025 0.2 12.4 0.4 1 23 525 547 525 547 0.93

8 10 2.1e-05 0.0017 18.9 5.4 1 23 553 575 553 575 0.97

9 10 3.1e-06 0.00025 21.5 1.9 1 23 581 603 581 603 0.99

10 10 1.7e-06 0.00014 22.3 0.4 1 23 609 631 609 631 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.056	4.6	8.1	2.9	1	23	235	258	235	258	0.94
2	10	0.00017	0.014	16.0	0.1	1	23	264	287	264	287	0.95
3	10	6.5e-06	0.00053	20.5	0.3	3	23	295	315	293	315	0.97
4	10	9e-08	7.3e-06	26.4	1.6	1	23	321	343	321	343	0.98
5	10	5.1e-07	4.1e-05	24.0	0.4	1	23	349	371	349	371	0.97
6	10	3.5e-05	0.0029	18.2	1.9	1	23	377	399	377	399	0.98
7	10	0.0025	0.2	12.4	0.4	1	23	525	547	525	547	0.93
8	10	2.1e-05	0.0017	18.9	5.4	1	23	553	575	553	575	0.97
9	10	3.1e-06	0.00025	21.5	1.9	1	23	581	603	581	603	0.99
10	10	1.7e-06	0.00014	22.3	0.4	1	23	609	631	609	631	0.98

Sequence Information

Coding Sequence: ATGGCACATCTCGTCACACAAAATCGGAACGAAAACTACCAGAAAATATGCCGACTGTGTCTCAAGAATGATGGATATTTGCTCGCCATTTTTAAAGTCGACCAAATCGAAGCTGATTTACAAAACAGGCATTTCCTTCAGCAATGTGAAAATGAGAAAAACGACCCGGCGGCAAACTCGAATCACGCTTTCAACATtcacaataaaattattgaatttctcCCAATTAAGgTTGGAAAAAATGATGGCCTTCCACCAAACATTTGTCATCGTTGTCTTTATAAAATTGAGCTTTGCATTAATTTCAAGCAAACATGTCTGAATGCGGACGCAACTTTGCGTCACAGATTCTCTCCATGCTCACCGGATGATGACGGAATTTCATCCAAAAACGACGACTTTGTTCGCAACCGGCATGTTGTAAAtcacttacaatttgaggagtTTTCGCTAAAGAATCATAAATTTCTTACCGAGCACGATAATGTTGAAAACTTGGTCACTGTTGTTGATCCAAACGTTGAATACGACTCAGACAATGATGTGGCACCGGCCGAATCGATAACGGCTACTCAATCAAATTATCGAGAAGAACATAGCGAAATAATAGTTCCGAATATAGTGACCCAACCACAATTGTCACGACAACCGAGTGATGTGGAAAATGATCCAAGCGGCGACATTAATgagttgaaaaatgtatttatgtgtCAATTCTGCGATCAGGCTTTTACGACAAACGAACAATGTTACATTCACGAACAAACTAATCACGATGCTGATACTCCATTTTTATGCCAAGATTGTGATATGGCTTTTGGTGATCGAGTCAATTACACCGCTCATTTAAAGTCGGTGCATCGAAATGATAAACCATTTGGATGTCCTGAATGTGAACGATCGTTTGGAAGGCGTTCTGATTTACGTAAGCATACCATCGTTCACACGGGAATAAAACCGTTTACTTGCCCGTTAtgtttaaaatcattttcaaggAATACGaatttaacaaaacatttaCGAATTCATAGTGGTCAGAAGCCCCACGTTTGTCCACAATGTCCACGAACTTTTATTTCTAAGGGAGATCTATCAAGGCATATGCTGATTCATTCTGGAATTAAGCCATTTTCTTGTAGTCAATGCGATCAGTCCTTTGGTCGTCGCGACAAATTGCTTCGCCACGAAAAACGACATATCCCACAAAATAATGACGACGAAACTGAACAAAATATGTCTCAGGAATTAGGATTTCTCAGACAACAACTACTGGAAAATCAGTATTCAAATCTTGAAGGTCTAAATGCCGATATTAAGCAAGAAATCGAAAGTGAGCAGGAAGATAATTCAGAAAATATGATTATTAGTTTAGATCCATATAATCATGATGCAAATGAGGAGGAACATATGGAAGTAGAAGAAAAAAGAGATGCAACTGAGTTTAGAGTGGAAAAACGCGACTCTTCAGAGGAAAGGGATGGTCCAGGGCATATAACTGGGGATGATGAGGTTGGTTTTCCGGGATTTTCGGCTGAAGAAGTAAAAATGGCGAAGTCAGAattgttaaaacaattttcttgtAACATGTGTCCAAAGCGATTTTCTAGTGGTGAAGCGTTACGGTTCCATTTGAACGCACATATAGGGCAACGTGCCCATAGTTGTCATTCCTGTTCGAAGACATTTGTACGAAAACGGGAACTGGAACGACATATGGTAACTCATACTGGTATGAAACCGTTTCAATGCCCGTCGTGCCCGAAGAAGTTTAGTCGCAAGGATAAAATGGTGCGACACAAACGCGTCCACGATGAGCAAAAGCAATTTGTTTGCGCTTATTGTTCAATGGCTTTCACACGAAAAGACAGTCTGGCCCAGCATATGAACAGTCATATGGTTAACGATGGTCTTTCGCTAAGTCTTGACGGCGAATCTGTTATGCTCGCATCAAGTGTTAACTCATCCGATTCTTGA
Protein Sequence: MAHLVTQNRNENYQKICRLCLKNDGYLLAIFKVDQIEADLQNRHFLQQCENEKNDPAANSNHAFNIHNKIIEFLPIKVGKNDGLPPNICHRCLYKIELCINFKQTCLNADATLRHRFSPCSPDDDGISSKNDDFVRNRHVVNHLQFEEFSLKNHKFLTEHDNVENLVTVVDPNVEYDSDNDVAPAESITATQSNYREEHSEIIVPNIVTQPQLSRQPSDVENDPSGDINELKNVFMCQFCDQAFTTNEQCYIHEQTNHDADTPFLCQDCDMAFGDRVNYTAHLKSVHRNDKPFGCPECERSFGRRSDLRKHTIVHTGIKPFTCPLCLKSFSRNTNLTKHLRIHSGQKPHVCPQCPRTFISKGDLSRHMLIHSGIKPFSCSQCDQSFGRRDKLLRHEKRHIPQNNDDETEQNMSQELGFLRQQLLENQYSNLEGLNADIKQEIESEQEDNSENMIISLDPYNHDANEEEHMEVEEKRDATEFRVEKRDSSEERDGPGHITGDDEVGFPGFSAEEVKMAKSELLKQFSCNMCPKRFSSGEALRFHLNAHIGQRAHSCHSCSKTFVRKRELERHMVTHTGMKPFQCPSCPKKFSRKDKMVRHKRVHDEQKQFVCAYCSMAFTRKDSLAQHMNSHMVNDGLSLSLDGESVMLASSVNSSDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01349881;
90% Identity: -
80% Identity: -