Basic Information

Insect: Sisyra nigra
Gene Symbol: -
Assembly: GCA_958496155.1
Location: OY292314.1:39524202-39531010[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00044 0.036 14.7 4.1 1 23 236 258 236 258 0.97

2 11 3.1e-05 0.0025 18.4 1.4 1 23 264 286 264 286 0.98

3 11 0.00014 0.011 16.4 2.3 1 23 292 315 292 315 0.96

4 11 0.0085 0.69 10.7 3.9 1 21 321 341 321 343 0.95

5 11 0.00014 0.011 16.3 1.9 1 23 349 371 349 371 0.99

6 11 1.4e-05 0.0011 19.5 0.5 1 23 377 399 377 399 0.98

7 11 0.00063 0.051 14.3 0.8 1 23 407 430 407 430 0.97

8 11 6.1e-05 0.0049 17.5 2.3 2 23 437 458 436 458 0.96

9 11 0.0011 0.086 13.6 0.3 1 23 464 486 464 486 0.98

10 11 5.6e-07 4.5e-05 23.9 2.2 1 23 492 515 492 515 0.97

11 11 9.2e-09 7.5e-07 29.5 1.7 1 23 529 551 529 551 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00044	0.036	14.7	4.1	1	23	236	258	236	258	0.97
2	11	3.1e-05	0.0025	18.4	1.4	1	23	264	286	264	286	0.98
3	11	0.00014	0.011	16.4	2.3	1	23	292	315	292	315	0.96
4	11	0.0085	0.69	10.7	3.9	1	21	321	341	321	343	0.95
5	11	0.00014	0.011	16.3	1.9	1	23	349	371	349	371	0.99
6	11	1.4e-05	0.0011	19.5	0.5	1	23	377	399	377	399	0.98
7	11	0.00063	0.051	14.3	0.8	1	23	407	430	407	430	0.97
8	11	6.1e-05	0.0049	17.5	2.3	2	23	437	458	436	458	0.96
9	11	0.0011	0.086	13.6	0.3	1	23	464	486	464	486	0.98
10	11	5.6e-07	4.5e-05	23.9	2.2	1	23	492	515	492	515	0.97
11	11	9.2e-09	7.5e-07	29.5	1.7	1	23	529	551	529	551	0.98

Sequence Information

Coding Sequence: ATGAGTGCCGATTTTAATGTAAACGAGATAAAAATTGAAGGCATCGAGAACGAATCGGGAGAAAATGCAAAtgatattcaaaattatttagatACATTCAACAAAGAAATCCAAAGCACGGACGGGACCGTTACTCAGTTAACAGAAGTTGAACGAGTAAATCCTGACGATGATGACGAAGGTACATATTTCGTGGATCAATCCGGACAATACTACTATCAGGCAAAGCCTGATTCGATTCCTGTGCTGACTTCGTTACGAGCCTCGCAAGAAGATGGGTCTGGCGCAGAAGAAGAAAATGAACAGGACGAAGAAACTGAAGGTCAAGAAAACGATGATGAAGAAGACGGGAAAAAGTTTATACTTCAACGCGAGGAAACTGAAGATGATGaagaagaaaatGCAACTATTAATGAAGGAAGTGAATCGAATCAAATGATTATGAACTCAAATGATGCTTTTCAAACAGTTACCATCGTTCCTTCTGAAACGACACCTGGTGAAGTAAGTTATGTTCTCATTGTACAACAACCTGACGAGGAAGATGGAAAAATTCAATCCGATGGCGATGGAGAACATTCGAATATGAATGTTTATGATTTCGATGAGAATGAAGAGGGCAGTGCGGCTGATTACGATGTTGAAGACGATAAGTCGAAAGTGATGAAAATTTTGTCTCGAAAATCGCAAACAGTTACGCAAGCTCATATGTGTAATTATTGCAACTATACAAGTCCAAAAAGGTATTTACTATCTCGTCATATGAAGAGTCATTCGGAAGAGCGGCCGCATAAATGTAGCGTTTGTGAGCGTGGATTTAAAACGTTGCCATCGTTACAAAACCACGTGAACACGCACACAGGAACGAAACCACATCGGTGTAAATTCTGTGATTCGGCGTTTACCACATCGGGAGAATTAGTGCGCCATGTTCGTTATCGGCACACGCATGAAAAGCCTCACAAATGTAAAGAATGTGATTACGCTAGTGTCGAACTTAGTAAACTAAAGCGACATATTCGTTGTCATACCGGAGAAAGACCTTATCAATGTCCACATTGCACCTATGCCAGTCCTGATACGTTCAAACTAAAACGCCATTTACGAATTCATACCGGCGAGAAACCGTATGAATGTGATTTTTGTGGGGCTAAATTCACCCAGTCAAATTCGTTAAAAGCCCATAAACTTATCCACAACTTGGCTGATCGACCAGTATTTCCTTGTGAGCTATGTCCAACCACTTGCGGTAGAAAAACTGATCTTCGAATCCATGTTCAAAAACTTCACACGTCTGATCGACCATTGAACTGTAAACGATGTGGAAAATCATTCCCGGATCGTTACAGTTTCAAGTTACACAACAAAACGCATGAGggagaaaaatgtttcaaatgcgACCTTTGCCCGTACGCTTCAATATCCGCTCGACATTTGGACTCCCACATGCTAATCCACACAGACCAAAAACCTTACCAATGCGACCAATGTGGTCAATCATTCCGACAAAAACAGTTACTAAAACGTCACCAAAACTTATACCACAATCCAAATTATATTCCTCCACCACCCCGTGAAAAGACGCATCAATGTCCAGAATGTGGCCGGTCATTCCGCCATAAAGGAAATTTAATCCGACATATGGCTGTGCATGACCCCGATTCGAGCTTGCAAGAAAAACAATTGGCTTTGAAACTTGGTCGAATGAAGAAAGTTCAAATTATTGATGGCCAACAAGTGGAAGTTATGCCGGGAATTGACAGTGAAATGGAAGATGAGGACGATGATGTTGTTATGTCGGCTGTTGAAGGGTCAGATGGACAGCAGTATGTCGTGCTAGAAGTTATTCAATTCGCTGAAGATGGGGAAGAAGATGGAAATGCATCTTCTGGCACTCTTCTGGAACCTGGAAATATTCTATCAGGAGAAGATATAAACGAAGACGTTCTAGCCGCTCTTAATGGACGAAGGATAGAAAAGGAGTGTCCCGAGGATAAGAAGTTTGAAACCGAGAAAGATATGGAGACCTGTTTTGGTTTTGATGACGAAGATCAAGATGATTTGGACAAAAAAGATGGAATTTCGATGTTTGAGTCTGACAAAGGCGAAGATTCGTAA
Protein Sequence: MSADFNVNEIKIEGIENESGENANDIQNYLDTFNKEIQSTDGTVTQLTEVERVNPDDDDEGTYFVDQSGQYYYQAKPDSIPVLTSLRASQEDGSGAEEENEQDEETEGQENDDEEDGKKFILQREETEDDEEENATINEGSESNQMIMNSNDAFQTVTIVPSETTPGEVSYVLIVQQPDEEDGKIQSDGDGEHSNMNVYDFDENEEGSAADYDVEDDKSKVMKILSRKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLPSLQNHVNTHTGTKPHRCKFCDSAFTTSGELVRHVRYRHTHEKPHKCKECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDFCGAKFTQSNSLKAHKLIHNLADRPVFPCELCPTTCGRKTDLRIHVQKLHTSDRPLNCKRCGKSFPDRYSFKLHNKTHEGEKCFKCDLCPYASISARHLDSHMLIHTDQKPYQCDQCGQSFRQKQLLKRHQNLYHNPNYIPPPPREKTHQCPECGRSFRHKGNLIRHMAVHDPDSSLQEKQLALKLGRMKKVQIIDGQQVEVMPGIDSEMEDEDDDVVMSAVEGSDGQQYVVLEVIQFAEDGEEDGNASSGTLLEPGNILSGEDINEDVLAALNGRRIEKECPEDKKFETEKDMETCFGFDDEDQDDLDKKDGISMFESDKGEDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01349873;
90% Identity: iTF_01349873;
80% Identity: -