Snig017492.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- -
- Assembly
- GCA_958496155.1
- Location
- OY292318.1:35104639-35110014[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.1e-05 0.0057 17.3 1.7 1 23 149 171 149 171 0.97 2 13 0.18 15 6.5 0.9 1 21 177 197 177 198 0.93 3 13 2.3e-06 0.00018 21.9 0.4 1 23 205 227 205 227 0.97 4 13 4e-05 0.0032 18.0 5.7 3 21 323 341 322 343 0.94 5 13 3.2e-05 0.0026 18.3 4.8 1 23 349 371 349 371 0.97 6 13 0.0027 0.22 12.3 1.1 1 23 377 400 377 400 0.95 7 13 0.0043 0.35 11.6 0.6 1 22 412 433 412 434 0.84 8 13 0.0014 0.11 13.2 0.6 1 21 442 462 442 463 0.94 9 13 9.4e-07 7.6e-05 23.2 0.6 1 23 471 493 471 493 0.96 10 13 0.00027 0.022 15.4 1.1 1 23 499 521 499 521 0.97 11 13 1.3e-07 1.1e-05 25.8 1.8 3 23 529 549 527 549 0.96 12 13 2.1e-05 0.0017 18.9 0.1 1 23 555 577 555 577 0.97 13 13 3.2 2.6e+02 2.6 0.7 1 23 582 605 582 605 0.89
Sequence Information
- Coding Sequence
- ATGGCAACATTCATCGCAATcgactttcaaaaaatttgtcgCGTCTGTCGAACCAAATcagaaaatttgaaatcaatCTACGATTCAATCATTTCATTATCAAATAACATTCAATCAAGCCTAGCGACCATGTTAAAAGAATGTGCTTCGGTCGACGTGAATATTGACGATGGTCTACCATCATCGATGTGTGACGAATGTATCGAAAAACTACGCCATGCCTTCGAGTTTAAATTAGAATGCCAACATACCGATTCCTTTTTACGTATAATCATGCAAAAAAACGATGAAATGCTGATAAAAACTGAAGCTGTAGACGAGTTTCCAATAGACATTGTTGAGGAGAAACCTGAACCGGTGCATGACGAGAACCTGTTGGCTACCACTCTGGAGAAGGTGCCAAATAAGTCTCAATTTATACCATCAAAGAGTTCAGCTCgcttttatttttgtaagattTGCAAGAAGAAATATAACCGCTTAGATAATATCAAACAACATATGGTTGTACATCTTAAAAATAAGCCGTTCGTGTGTCGAATTTGTAAGAATGGGTTTATTAATATGGATCGGTTGCATAAGCATGAGAAGCGGTGTAAGGGTGATAAGATATATTTCTGCGATATTTGTAGTAGAAGCTTTAATCGAGCTGATAGTCTCAAGGCCCATCAAGATATCCACTCAGTCGATGAGACACGAGCAAATTTAGACTCTTTAGCGAACATCGAACGATATATTTTGGTCGAAAACGTCGAAACTCGAGAAATCATAGAGTTAGAATCCATGCAAGAAATGCGTGAGTCAGAACCGGATAGTTTATCGTTTTCAGAGGAAGATGTCGCTAGTGACGAATCGGTTGTAAAAGTTCGTCAGCGAGGTCGTCCGAGACAAATCACAGAATTGCCACCATCCAAGTCGGGGTTACGCAAAaagaagaaagtaatattttactCGTCGAACCCCCCCTGTCCTGTGTgtcacaaaaaatttaaaaaatccagCCAACTCAAGCGACACATGTCGTGTCACATCACAAATAAGCCGTTTTCATGTCCGCTTTGTAAGAAAAAATTCGCGCGTAAAGATCATATGCTACGTCATACTCGATTTCATGACAATCAAAAAGACTTTAAATGCGACTTGTGCTATCGGGAATTTTCTAAAGAGCAACAACTCGTGCAACACAAAGCGATCAAACACGATATCGGCGAGAAACAAGTgactgaaaaaaagtttcagtgcGATGTTTGCTCGAAAAGTTTCACCACGGAAAAATATCGGGATTTACACGTGGCAGCGCACCAGGCCGATACGTTTAAAGGGTATCGATGTAAAAATTGCAATGCTTCTTTTACATTAAAACGGGAACTGCTTCAACACGAGAAAGAAAGCGTTGATTGTTTGAGAAAGTTTTTGTGTTCGGAATGTGGAGAGAGATTTAttaggaaaaattatttaatagttCATATGCGACGACACCGGGGAGAGAAACCGTTCAAATGTAGATTTTGTGGCAAAGGATTTCCACGAACGACCGACGTGACTAGACACGAACAGTTGCATACAGGCGAAAAAAATCACCTTTGTGTCATATGTGGAAAAAAATTCAGCCGGGCATATAATTTAAAGTTGCACATACGTACTCATACCGGCGAAAAGCCGTATGCTTGTATGTTTTGTGATGCAGCTTTTGCCCAGAGCAACGATTTGAGAGCCCATATTCGACGACATACGGGTGAAAGATTTTACTGTAATTTATGTCCCGATTCATTCCTCATGGGCTATATGTTAAGGCAACACAAACGCAATGTGCATCAGGTGGAGTGCAGCGATGAAAAAGTCGAACCCGTAAAAGATATGGATAAGACTAAGTGTCATTTGGCCATCTAG
- Protein Sequence
- MATFIAIDFQKICRVCRTKSENLKSIYDSIISLSNNIQSSLATMLKECASVDVNIDDGLPSSMCDECIEKLRHAFEFKLECQHTDSFLRIIMQKNDEMLIKTEAVDEFPIDIVEEKPEPVHDENLLATTLEKVPNKSQFIPSKSSARFYFCKICKKKYNRLDNIKQHMVVHLKNKPFVCRICKNGFINMDRLHKHEKRCKGDKIYFCDICSRSFNRADSLKAHQDIHSVDETRANLDSLANIERYILVENVETREIIELESMQEMRESEPDSLSFSEEDVASDESVVKVRQRGRPRQITELPPSKSGLRKKKKVIFYSSNPPCPVCHKKFKKSSQLKRHMSCHITNKPFSCPLCKKKFARKDHMLRHTRFHDNQKDFKCDLCYREFSKEQQLVQHKAIKHDIGEKQVTEKKFQCDVCSKSFTTEKYRDLHVAAHQADTFKGYRCKNCNASFTLKRELLQHEKESVDCLRKFLCSECGERFIRKNYLIVHMRRHRGEKPFKCRFCGKGFPRTTDVTRHEQLHTGEKNHLCVICGKKFSRAYNLKLHIRTHTGEKPYACMFCDAAFAQSNDLRAHIRRHTGERFYCNLCPDSFLMGYMLRQHKRNVHQVECSDEKVEPVKDMDKTKCHLAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -