Basic Information

Insect: Sisyra nigra
Gene Symbol: -
Assembly: GCA_958496155.1
Location: OY292313.1:25636110-25642974[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0092 0.75 10.6 0.5 1 23 284 306 284 306 0.98

2 10 0.0039 0.32 11.8 1.1 1 23 320 342 320 342 0.97

3 10 2.7e-06 0.00022 21.7 0.4 2 23 382 404 381 404 0.94

4 10 0.00036 0.029 15.0 0.4 2 20 513 531 513 533 0.94

5 10 0.00013 0.011 16.4 1.4 2 23 582 603 581 603 0.97

6 10 2.9e-06 0.00023 21.6 1.1 1 23 609 631 609 631 0.98

7 10 7.2e-06 0.00059 20.4 1.7 1 23 637 660 637 660 0.94

8 10 1.5e-07 1.2e-05 25.7 0.8 1 23 666 688 666 688 0.99

9 10 9.1e-07 7.4e-05 23.2 2.5 1 23 694 716 694 716 0.99

10 10 1.7e-07 1.4e-05 25.5 1.1 1 23 722 744 722 744 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0092	0.75	10.6	0.5	1	23	284	306	284	306	0.98
2	10	0.0039	0.32	11.8	1.1	1	23	320	342	320	342	0.97
3	10	2.7e-06	0.00022	21.7	0.4	2	23	382	404	381	404	0.94
4	10	0.00036	0.029	15.0	0.4	2	20	513	531	513	533	0.94
5	10	0.00013	0.011	16.4	1.4	2	23	582	603	581	603	0.97
6	10	2.9e-06	0.00023	21.6	1.1	1	23	609	631	609	631	0.98
7	10	7.2e-06	0.00059	20.4	1.7	1	23	637	660	637	660	0.94
8	10	1.5e-07	1.2e-05	25.7	0.8	1	23	666	688	666	688	0.99
9	10	9.1e-07	7.4e-05	23.2	2.5	1	23	694	716	694	716	0.99
10	10	1.7e-07	1.4e-05	25.5	1.1	1	23	722	744	722	744	0.97

Sequence Information

Coding Sequence: ATGTCGATTGATAATTCAGTGCTCAATAATCGAGTTCTTCTGGATTCTGCAAGCGctgaaattaatcaaaatgatGTACAATATATGAATAACACAAACACACTTATGAATAGAATGGATTCGGGGAGTTTATTAGATGTAGCGACGGCGGCTAGTTTATTTTTACCCGATGGACCTGAATCACTACCTCCACCAGATCAGTATCCCCCTGAAGAAATTTTATCAGCTCAAGATTTAACTGAGGAAGATAGAAAATTAGCGGCTGCCTTGGTAGCTGTACAGCTGGTGCAGCAGCAGAAACAGCAACAGCTTTTATTGAATGATGCAGCTATGTCTTCAGTTAATAATCATAGTTCCACGGAAGTATTACCTGAAATAGTGAATTTAGaGAAAATGGCATTAGGAAGAGCTATCACAAATTCACAACCATTAGATTTACCTTCTATAGAAAAATCACTATCAACAAACTTTATGAACAACTCTGATTCTCATATTTCAAATCAGCAGCAATTAGATTTAAGTACTGAACAATCTCTTCTTACACAACCAACCCAAAAACGGTCAAGTCATTGGCCAGGAAGTAAAAGCAGGAACAATTTGAAACGGGAAAATAATAAAtTATCGACTAAACCACCTTTACGCTTTGCCGCATTGTCGAGTATTTGCTCTTCGTTTTCTGAATCTATcgatataaaaattgaagacgAGCTGGATGAAGCAGATGATGGCGACTCTGATTATGACGTAAAAACGGAGACACGatcttcaaaaaaaagtttacccCATAAAAAACGAATATCTCGAAAATTGAGACATAATCCTAAAAATGTTAATGCTCACTCAAAATTTTACAAGTGCAACAGTTGTTCGGAACAATTTATGAGTCAAGCAGAATATAGCGCGCATAAAGCTATGCACAATGCGAGTAACTCGACAAATAAATTGAGTAACGTACCCTTTTCATGTCAGCTTTGCCCCCAAAGATTCGATAGTCAGTTACAGTTTTTCGAACACTTAAAAGGTCATTATGAACCTTTGGTGCAGTTAAATGAATTTCAGaaaagtcAAAATCGAATTCAAATACAAAATGTAAAGGCTTTAAATTCTAGTGAGAAAGAATCCTCTTTAATAGCATCAGCTCTCAAATGCTCAGATTGTGGAAGAACATTTAAGAGACAAAAAGCATACGAAGCTCATGTTAGAGATGCCCATTCAAAGcttaACGAAATCGAAGAGTTTAGTGAGCCAGAAGATTTAATGGAAGGAATTAGATTTAAAGTTGTCGTCGACTCAGAAGATTGTGATAATGATAACGACGTAATTTTATCTAATCATCCTATTGCATCGGGAACCGAAAACcaaaatttagaagaaaaacattCTTCATCAAACCAATTGCTACCCAATTCTCATATTGAAATCCATAGTTATTCAAAAGTATGGTACCGTGAAGATGAACTTCATGCAACTGAAGCTGATTTACGAGAATTAGAAGCTCAACAATTCAAAGAATCTCAAATTAATTCATCGGTCAATTCTTGTCATCTTTGTGGGGCCGTTTTTGAGCAACGATCGTATTTAACTCAACATTTAACACAGTGTTATTTGGGCATAAAACAAGAAAcagaatttttgaattcttcATCTAATGCTGTTCAGCAACCTGAAACGACTGAAACGATTAAACTAGACGACATAGAAGatcCGAAATCCAAAAAGTACCAGAAAAAGGGTAATCAACTTGTTTGTACGATTTGTGGTAGATTATTTAATCATCGCAATTCATTGGTGTACCATTTGAGAAGTCATTCAGGAGAACGGCCTCATAAATGCGATGAATGTGGGAAAAGTTTTTTTGCTTCCAGTGCTTTAAaggttcaTTTACGTTTACATTCTGGTGATAAGCCATTTAAATGTGAATACTGTGGTCGTCATTTTCGACAGTGGGGAGATCTTAAATATCATTCTATATCGATTCATTCGGACCAAAGACAATATCAATGTGAATATTGTGGAAAAGATTTCGCTCGCAAATATTCTCTTATTTTACATAGGCGAATACATACTGGAGAGAAGAATTATCAATGtgaatattgtaataaaacatTTCGAGCGTCAAGTTATTTACAAAATCACAGAAAAATTCATACTGGAGAAAAACCGCATCCGTGTGATATTTGTGGAAAACCATTCAGAGTTCGATCGGACATGAAACGTCACATGAATACTCACAATAAATATAGAGAACCTAAATCTCCTGAACCTAAACTATCTCCCGTACCTGGGGAAATGCAAGAAAACAATAGTAAACCTGATATTTCAATAAGTGAATTTTCCGATATTAACCAACTAACGACTGAATCGGCGACAACTGAGTTAAACAAAGTTGAAAGCAATATGAAAACGGAAATGCAAGATGTATTACAGACACCAAAGGAAGAGGATAATAACGGAGCTTTGTATGCTATTCAGTCTGATCCATTAGCTATTAGAGAAGGCAACAACACTCTTTATGTTTGGCCCGTTTATATGAACTAA
Protein Sequence: MSIDNSVLNNRVLLDSASAEINQNDVQYMNNTNTLMNRMDSGSLLDVATAASLFLPDGPESLPPPDQYPPEEILSAQDLTEEDRKLAAALVAVQLVQQQKQQQLLLNDAAMSSVNNHSSTEVLPEIVNLEKMALGRAITNSQPLDLPSIEKSLSTNFMNNSDSHISNQQQLDLSTEQSLLTQPTQKRSSHWPGSKSRNNLKRENNKLSTKPPLRFAALSSICSSFSESIDIKIEDELDEADDGDSDYDVKTETRSSKKSLPHKKRISRKLRHNPKNVNAHSKFYKCNSCSEQFMSQAEYSAHKAMHNASNSTNKLSNVPFSCQLCPQRFDSQLQFFEHLKGHYEPLVQLNEFQKSQNRIQIQNVKALNSSEKESSLIASALKCSDCGRTFKRQKAYEAHVRDAHSKLNEIEEFSEPEDLMEGIRFKVVVDSEDCDNDNDVILSNHPIASGTENQNLEEKHSSSNQLLPNSHIEIHSYSKVWYREDELHATEADLRELEAQQFKESQINSSVNSCHLCGAVFEQRSYLTQHLTQCYLGIKQETEFLNSSSNAVQQPETTETIKLDDIEDPKSKKYQKKGNQLVCTICGRLFNHRNSLVYHLRSHSGERPHKCDECGKSFFASSALKVHLRLHSGDKPFKCEYCGRHFRQWGDLKYHSISIHSDQRQYQCEYCGKDFARKYSLILHRRIHTGEKNYQCEYCNKTFRASSYLQNHRKIHTGEKPHPCDICGKPFRVRSDMKRHMNTHNKYREPKSPEPKLSPVPGEMQENNSKPDISISEFSDINQLTTESATTELNKVESNMKTEMQDVLQTPKEEDNNGALYAIQSDPLAIREGNNTLYVWPVYMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -