Snig017493.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- -
- Assembly
- GCA_958496155.1
- Location
- OY292318.1:35115822-35124656[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.6e-06 0.00013 22.4 2.5 1 23 124 146 124 146 0.99 2 14 2.4e-05 0.002 18.7 3.6 1 23 160 182 160 182 0.98 3 14 0.00016 0.013 16.1 0.4 1 21 188 208 188 209 0.94 4 14 0.001 0.085 13.6 0.6 1 23 216 238 216 238 0.95 5 14 4.4e-06 0.00035 21.1 5.0 1 23 309 331 309 331 0.98 6 14 4.4e-07 3.6e-05 24.2 4.0 1 23 337 359 337 359 0.98 7 14 0.011 0.92 10.3 0.3 1 23 367 390 367 390 0.92 8 14 0.033 2.7 8.8 1.7 1 23 402 424 402 424 0.86 9 14 0.0013 0.1 13.3 0.3 3 20 433 450 432 452 0.94 10 14 4.8e-06 0.00039 20.9 2.0 1 23 460 482 455 482 0.96 11 14 0.00064 0.052 14.2 3.6 1 21 488 508 488 510 0.94 12 14 0.00097 0.079 13.7 2.5 5 23 520 538 516 538 0.93 13 14 2.6e-06 0.00021 21.8 0.6 1 23 544 566 544 566 0.98 14 14 0.18 14 6.6 0.6 1 23 571 594 571 594 0.96
Sequence Information
- Coding Sequence
- ATGGATGAAATCGATGTGAAGAGCATTTGTCGTGCGTGTAAAAGAAAATCGGATCGAATGAGGTCaatttttgaaacgaaaaaCTGTGATGGAACCGACTTAAAAGTGGCCGATCTTATAATGGCGTGCGCTTCAGTCACGattgccAATGAAGATGTTTTACCCAAATCAATCTGTGAATCATGTCTGGATCGTCTATTCGCAGCGTATTCATTCAAAAAACAAGTCGAATCCACCGACTTTAGTTTACGGgaaacttttcaaatcaaacaagAACTCAACAATACCAACGATTTTGGATCGACCACCGATTTCAAACAGTCGACAATCAAGCAAGAATTAGAGGATGActcaaaacttattttatcatATTCATGTTCGAtttgtaacaaaaatttcaCCTCACACTCGGCATTGGTTTCCCATCAACAAACGCATCGAGCCAAGAAATATTCCAAGTCAAAATCGAGCAAAACTTTTCGATGTAAACTTTGTCACGAATCGTTTCCACGAAAGATGAATGTACGGCGGCATATGTTCATTCATTTAAAGGACAAGCCGTATGTATGTAAGACCTGTAAAAGGGGCTTTGCAAATTCCACAAATTTATCGAATCATGAAATGCGCTGCATGGGTCAGAGGCCTTTTATTTGTACGCTATGTAATCGAGGATTTCAACGCGAAGACACCCTTCGAGTGCATAAGGGGAGTCATAAAGGTCAAGCAATGCTCGATACAATGGACAATATCGAAAATTACATTGAAATCGACGAACCGGATAATGTCGATAATGAAGAAATTTCCCCACAAGAATTCCTAGATCCAAACATTGCAATCAATGAGGTCGATAAGGAAGAGAGTACATTTAATCAGTACGaagatgtaaaaaaatatgttaaatatgaaaaaaaatcggaTTCTTCGTTCACTTGTGATATATGTTCCAAGACTTTTATTCGATCGTATCATTTATCTCGACATAAAAAGTCGCATTTTGACGAGAAACCGTTTCAGTGTGAGATTTGTCAGAAGACGTTCACCCGCAAAGACCATATGTTGCGACATCTTCGACTGCATAGCGTTCCACAAGACGTTACATTTCCTTGCGATCAATGTTCGAGCGTTTTTGCTCGCAAAGAGGTTTTAGTACGACATAAAGCTAACAAACATAACGAAGGGGAACGGCCGACTCCTGAGAAACGATTTCAGTGTGAGATTTGTTCGAAATGTTTCGCTGTTGAAAAATATCGGGATATGCATGTGAAAGCCCATGCCCTGAAGAGGGAAGACGCTATTTGTAAAACGTGTAATCAAAATTTCGTAACACGTAAAGAGCTGGTGCGACATTTGTCTCTGGCGAATGATTGCTCGAAAAAGTTTCTATGTTCGGAGTGTGGACAAAGATTTATTAAACAGAGTCAATTACTGGTTCATATTCGACGACATCGGGGGGAGAAACCTTTCAAGTGCAGATATTGCGACAAAGGTTTTCCTCGGACCACCGATTTGAAAGCCCACGAAAAATGtcatactggcgaaaaaaatcatttatgtaTCGTTTGTGGGAAAGGTTTTGGACGagctTGTAAGCTTACATTACATATGCGAACGCATACTGGCGAGAAACCTTACGCATGTACAATGTGCAACGCGTCATTCGCGCaaagaaatgatttaaaaacACACATACGACGTCATACCGGCGAACGTTACCATTGCGACCTGTGTCCTGAAGCTTTTCTCGTCGGATACATGTTAACgaatcataaaagaaaaattcatggcATCGAAATAGCATCACCATGCCCCAGAATCTTGACTCAATTCCCACTGCGTGCCCCGGAGGAACCTAAACCCCTTATAAACAACACAGCTTCCGATGAAATATCTGAATCAAACACAAAAGAAACGAATTTAACGTAG
- Protein Sequence
- MDEIDVKSICRACKRKSDRMRSIFETKNCDGTDLKVADLIMACASVTIANEDVLPKSICESCLDRLFAAYSFKKQVESTDFSLRETFQIKQELNNTNDFGSTTDFKQSTIKQELEDDSKLILSYSCSICNKNFTSHSALVSHQQTHRAKKYSKSKSSKTFRCKLCHESFPRKMNVRRHMFIHLKDKPYVCKTCKRGFANSTNLSNHEMRCMGQRPFICTLCNRGFQREDTLRVHKGSHKGQAMLDTMDNIENYIEIDEPDNVDNEEISPQEFLDPNIAINEVDKEESTFNQYEDVKKYVKYEKKSDSSFTCDICSKTFIRSYHLSRHKKSHFDEKPFQCEICQKTFTRKDHMLRHLRLHSVPQDVTFPCDQCSSVFARKEVLVRHKANKHNEGERPTPEKRFQCEICSKCFAVEKYRDMHVKAHALKREDAICKTCNQNFVTRKELVRHLSLANDCSKKFLCSECGQRFIKQSQLLVHIRRHRGEKPFKCRYCDKGFPRTTDLKAHEKCHTGEKNHLCIVCGKGFGRACKLTLHMRTHTGEKPYACTMCNASFAQRNDLKTHIRRHTGERYHCDLCPEAFLVGYMLTNHKRKIHGIEIASPCPRILTQFPLRAPEEPKPLINNTASDEISESNTKETNLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -