Snig010285.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- -
- Assembly
- GCA_958496155.1
- Location
- OY292316.1:363159-380089[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.015 1.2 10.0 0.3 7 23 444 460 439 460 0.95 2 18 0.00059 0.048 14.4 1.1 1 23 465 487 465 487 0.97 3 18 0.0011 0.091 13.5 4.7 1 23 493 516 493 516 0.96 4 18 1.2e-05 0.00099 19.6 0.8 1 23 617 639 617 639 0.94 5 18 0.017 1.4 9.7 0.5 1 23 645 667 645 667 0.95 6 18 2.2e-06 0.00017 22.0 0.7 1 23 673 695 673 695 0.96 7 18 0.0002 0.017 15.8 0.9 1 23 700 722 700 722 0.97 8 18 0.00052 0.043 14.5 0.6 2 23 729 750 728 750 0.95 9 18 0.00022 0.018 15.7 1.8 1 23 756 779 756 779 0.96 10 18 0.0001 0.0081 16.8 0.8 3 23 879 899 877 899 0.94 11 18 0.004 0.33 11.7 2.5 1 23 905 927 905 927 0.95 12 18 0.0002 0.016 15.8 1.9 3 23 935 955 933 955 0.95 13 18 0.0029 0.23 12.2 3.4 1 23 961 983 961 983 0.97 14 18 0.00011 0.0089 16.6 2.9 1 23 989 1011 989 1011 0.97 15 18 5.2e-05 0.0042 17.7 3.4 1 23 1016 1038 1016 1038 0.96 16 18 0.00011 0.0085 16.7 4.3 1 23 1044 1066 1044 1066 0.96 17 18 0.017 1.4 9.8 6.4 1 23 1072 1094 1072 1094 0.97 18 18 6.3e-07 5.2e-05 23.7 0.5 1 23 1100 1122 1100 1122 0.98
Sequence Information
- Coding Sequence
- ATGGATAAGGACCAAGTGAATGCCTTAAATATGCACAAAAGTTTAACATTTCAAAAAGAACTGTCGCTTAAAGCTAATACAAACGATCAATCAATTAATGCAAAGCAATTTAATACTGAAAATGATGCCAATGAAGAATTTATTAGTACAACTGGAGtggaaaaaatCAAAGTGGAAGAATTTTGGGACACCGACTCTGACACATCCACTGCAGATGCTGTGAAATGGGATGATAATCACGTAGTTaccataaaaattgaaaaagaggCCTTAACTGAGATGGAAAATGACCCTCAAGAATTAATTTCAGAGAATGATCTTAATATAAAAACTGAAATTGATTTTGACGAGGGAATTTATGGTACAAATGCAGAGAATGAAAAAGAATTGCAACAAATAGCAACCGAGAAAGAAAATGTATCATCAATGATGGCAGAAGCGAAAGCCAGAGCTAATACACCATCGGTATCAGATGATGTTTCTGATGAAATCGAAAGATTGGCTGTACTTGATTATTATAACAAGAGAAGCATTTACCGGAGGAGGATTGCATCCAGTAAGCGTATTAAATTAGCGCCATCAACTACTCCTATGGCCGAGAAAATATCTCAATCGGACGTTGATTCTTTGTTTCCACCAGAAAATGATAATGGTATTGATGTACCATTACATTTAGAATACCaagaatcattaaaaaattcgATAAATCCATCTGCAAATTTTAATACTTCATCGTCGTCAACCTCACGTTTTAAACAAACACCAAAAGTAGTTGATAAtgtaccaatcaagaagaaattAGTCGTTAAAACGAAGAGGAATTGCATGCATAAAGCGCAAGGTATTAAAACTCCACCATCTATGTCTGATTCAAATGGCTTTCATATGAATACAGAATCTTTCGATCAAACCCCAACCGAACCAGATAGTACATCGGAAGATTCAGATGAAGAAAGCCATCCAGTAACGACAGGATTGGTCGCTACTTTTGCTCATGAAAAGAttACAGCACGAGATGTTTGGATGCAGAAGcaaatttataaatcaattaaaagagCTTATcagcaacaacaaaaaaatgcaaAGATTGTTACAGCCTGTCCTGATCACCCGCATAAggTTGAAATTGCACCTGGTTGCGGATTTTATAtcacaaaaactttaaaagctcTAGTAGACAAGAAATATGAACAAACAAATACCTGGGACGTTATTGTAAAAGAAATTATGGTCGAGGTCTATGGAGACGATATGATTAATTTTTCTGCGACCGGAAAACGATTTAACTCTCGTCCGAGAATTAATCCAAAATTGTTTTGCGGGTTATTAGgtaaatcattttctcAAGACCATGAATTGAAAGAACATCAACGCATTCATACTGAGGGACGATACGTTTGCAATGTTTGTGGTAAAGCATTTCATTCGGGTAACAATTTTGATCGACACAAGCTGATTCATTTACGCGACAAATCCCATTCTTGCACAATTTGTAacaAAACCTACTGTCGAATACAGGACTTGGAAAATCATACACTGACGTATCATAATGAGAAAAGACCACACGTGTGTGAAATTTGTGgAAATATCAAAGAGGAAGAAACTTCAGAAACCGATATAAAACCCGTGAAAGTGGAGGATAATTATGGAGACGAGGTCGTCATAAAAACTGAAAAGGATGTAAAAGTTGAATTGGAAATTGTTCCTGATGAatcaatttcgaaaaattgttcagAAACAAAAAGTGAAATTGATATTGACGAAGGGATTTTTGTGGCAAATGCAGgtAAATCATTGTCGCAAGTCAATAAATCAAAGGTGCGTAAACGTACTCCTGCTTTGAGACAGTTTATTTGTAATGTTTGTGGTAAATCATATACAAGTTCAGTTAATCTGTATCGACACAAAGTGAATCATTGCGATGACAAAGCGTTTCATTGTGATATTTGTCGTGTATCATTTAATCTACAAGAAGACCTAGTAATTCACAAAGAACTTCATGTGAACGATAAACTACATATTTGCTATGTTTGTGgtaaatcattttctcAAGTTGATGCATTACGGGCGCATCAACGTAATCATAACACGGGAAATTATCCTTGTAATCTTTGTGGTGATTCATTTAATAGTTCAAATAATCTTTATCGACATAAAATGAatcatttgaatgaaaaaacccTTAGTTGTGAAATTTGTAgTAAATCATTCCTTCGACGAGAAGATTTAACAAGGCATAAGGAAGTTCATAGCATAAACAAACCGTTCACTTGTAATGTTTGTGATACCACATACCGTCAATTGCAGGATTTAAAAACGCATAAGTTCACGGTTCATGTTGGAAAACGAATACATGTTTGCGAAATTTGTGaaaatatcaaagaagaaGAAATTTGGGATGTAAAGTTTGATCAAACGGAAACCGATCCTTTGAAATTAGATGATTATTCAAGCGAAGCCGTGATTAAAACTGAACAACAAGAATTAGCTGAGATAGAAAGTGTCCAAGAATTATTCTCAGAGGACGATCCcgataaacaaattaaaattgatgtaGACGAGGGAATTTTCGAGACAACTGCAGGTAAAGAATTGAATCATGAAAAACTAGAAAAGCATAAAAATCTACACCTGTGTGATGCTTGCGACAAATCATACAGTCGTGCAAGTAATATGAATCGACATAAATTGGTTCATACAGGTGTAAAACCATTCAAGTGCGATACTTGTAgtaaatcgttTCTTCTTGAAGACCATCTACGAACACATCAATTAATTCATACGGGCGAAAGACCGCATCTGTGTGACGTGTGCAATAAAAGATTTACTCGTGTAAGTTATTTGAATGAACATAAATTAGTGCATGCAGGTGTTAAAGCACACAGCTGCAAATTTTGTAGCAAACCATTTTTTCGTATGAAAGAGTTGAGAATACATGAACgtattcatactggtgaaaaacctcACGTTTGTGATGTTTGTAGTCGATCATTTTCTCAAGCTCATGATTTTAAGTTACACCAAATTATGCATACTGAAGGAAAACACATTTGTAATGTTTGTAgtaaatcatttaatcaTGCAAGTAATTTGAGTCAGCATAAATTGATTCACTCAGACGAAAAACCACATTCATGTGGAATTTGTAgtaaATCATTTCGACGAGTTGAACACTTACGAAAACATAAATTGATTCATACAGGGGAAAAACCACACACTTGTAATGTTTGCAataaatcatttacctgtgaaaattatttgaaacgaCATAAATTAATTCATGCAGGTGTGAAGGCTTATAACTGCGATATTTGTAgtaaatcatttgttcagatagaaaatttaagaaaacatttGCGAGTTCATACTAGGAAAAAATTGGCAGGGGCgtga
- Protein Sequence
- MDKDQVNALNMHKSLTFQKELSLKANTNDQSINAKQFNTENDANEEFISTTGVEKIKVEEFWDTDSDTSTADAVKWDDNHVVTIKIEKEALTEMENDPQELISENDLNIKTEIDFDEGIYGTNAENEKELQQIATEKENVSSMMAEAKARANTPSVSDDVSDEIERLAVLDYYNKRSIYRRRIASSKRIKLAPSTTPMAEKISQSDVDSLFPPENDNGIDVPLHLEYQESLKNSINPSANFNTSSSSTSRFKQTPKVVDNVPIKKKLVVKTKRNCMHKAQGIKTPPSMSDSNGFHMNTESFDQTPTEPDSTSEDSDEESHPVTTGLVATFAHEKITARDVWMQKQIYKSIKRAYQQQQKNAKIVTACPDHPHKVEIAPGCGFYITKTLKALVDKKYEQTNTWDVIVKEIMVEVYGDDMINFSATGKRFNSRPRINPKLFCGLLGKSFSQDHELKEHQRIHTEGRYVCNVCGKAFHSGNNFDRHKLIHLRDKSHSCTICNKTYCRIQDLENHTLTYHNEKRPHVCEICGNIKEEETSETDIKPVKVEDNYGDEVVIKTEKDVKVELEIVPDESISKNCSETKSEIDIDEGIFVANAGKSLSQVNKSKVRKRTPALRQFICNVCGKSYTSSVNLYRHKVNHCDDKAFHCDICRVSFNLQEDLVIHKELHVNDKLHICYVCGKSFSQVDALRAHQRNHNTGNYPCNLCGDSFNSSNNLYRHKMNHLNEKTLSCEICSKSFLRREDLTRHKEVHSINKPFTCNVCDTTYRQLQDLKTHKFTVHVGKRIHVCEICENIKEEEIWDVKFDQTETDPLKLDDYSSEAVIKTEQQELAEIESVQELFSEDDPDKQIKIDVDEGIFETTAGKELNHEKLEKHKNLHLCDACDKSYSRASNMNRHKLVHTGVKPFKCDTCSKSFLLEDHLRTHQLIHTGERPHLCDVCNKRFTRVSYLNEHKLVHAGVKAHSCKFCSKPFFRMKELRIHERIHTGEKPHVCDVCSRSFSQAHDFKLHQIMHTEGKHICNVCSKSFNHASNLSQHKLIHSDEKPHSCGICSKSFRRVEHLRKHKLIHTGEKPHTCNVCNKSFTCENYLKRHKLIHAGVKAYNCDICSKSFVQIENLRKHLRVHTRKKLAGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -