Snig017494.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- -
- Assembly
- GCA_958496155.1
- Location
- OY292318.1:35124871-35135729[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.6e-06 0.00054 20.5 2.9 2 23 214 235 213 235 0.98 2 11 1.2e-06 9.6e-05 22.8 1.3 1 23 241 263 241 263 0.99 3 11 3.7e-05 0.003 18.1 4.5 1 23 271 293 271 293 0.97 4 11 0.00041 0.034 14.8 1.5 1 23 299 321 299 321 0.98 5 11 1.6e-05 0.0013 19.3 0.9 1 23 333 355 333 355 0.96 6 11 8.7e-07 7.1e-05 23.3 2.8 1 23 361 383 361 383 0.96 7 11 1.7e-05 0.0013 19.2 0.3 1 23 389 411 389 411 0.98 8 11 7.4e-07 6e-05 23.5 0.6 1 23 417 439 417 439 0.98 9 11 1.9e-05 0.0015 19.1 1.5 2 23 446 467 445 467 0.97 10 11 3.2e-05 0.0026 18.3 0.1 1 23 473 495 473 495 0.99 11 11 5.1e-08 4.1e-06 27.1 0.5 1 23 501 523 501 523 0.98
Sequence Information
- Coding Sequence
- atggataataatttaattaaaacggaCATTTCATCGCAATTCTGTGCGAATAAAATATGCCGTGCGTGTTTGAATGAGGACGGCGAAATGCGATCTGTGTTCCTGGTCGATGAGGCGAATGGACAATCGATGCGATGGTCCGAAATGCTGATGGGTTTCTCATCAGTCCAGATTTCATCGGGCGACGGTCTTCCAGAGTTGATTTGCACGCAATGCGCAATTCAAATCACTCGAGTTTTCTCCTTCAAGCAGCTTTGTGAACGATCCGAGGCCACCCTCCGACAGTACCTAGGTAAACCATTGCCTCCGCCAGTACCCGCACAGCCCATCTACCAACAGTCCTCGGCCCCCGTGAATagttttaaagaagaaaaacaCGACGACAGCAACTACGACCAATTTTACCTGGACTCGTTCGGTCTCGACTCCGACGACTCGGACGACTCCGACTCGAAAACCGATATTCTCGATAATGTTACGACGACAGAACTGGACGGTAACGATGAGAAAGCGATCGCCAAACGACAATTGTTACAAATGGGAAAATTGCACCAGCACCGGATGGCcacaaaaaagaaactaatGGCCGGGAAAATTTCTAAGAGCACCGCGAAAAAGTTGATCAAACGAAAAACGAATCAATGTAACGTTTGTAAGAagacttttattaatttacaatcGTTTCGAAAGCATTTACGTACACATATCGAGGATCGACCGTATAAGTGTAAAATGTGTCCGCGGGGCTTCACCGAGGAAAACTATTTGAATAACCACATGCGTACTCATATTCCAGAAGAGCAAAAGCCACATGAAtgtgaaatttgtaaaaaacgaTTCATTCATATGTCGCTGTTGAATAAGCATTTGATGAAGCACTCGGGAGAAAAACCGTTCGTCTGTAAAATTTGTAACAAAGgGTGTTACGCAGAAAACAGTCTATTGAAACATATGAAAATCCACGAGAAAAAGGAGGGTGATCCGGCGTTGTTGAAGCACATTTGCGATTATTGTAAACGTGAGTTTTCCGATTCGGAATCGTTGGCGATTCACATTAAACAGCACACGGGTGATCGTCCATTCTTGTGTAATATGTGCGGAAAATGTTTTCCACAACGATTTAATCTCGAGTTACATCTTCGTACCCATACGGGAGAGCGGCCATTTGTCTGTGAGGTCTGTAAAAATGGCTACGTCTCAAAGGCAAGTCTGAAAATCCATATGCGAACTCACACCAATGAACGTCCGTTCGTGTGCGACTTTTGTGGAAAGGCCTTTCGACAATCAGGTGATCTGACCAGCCATAAACGACTTCATGGAACGGAAAAACCGATCGAGTGCAATATTTGTCAAAAACGaTTTACCACTGTTATGAAGTTGAAGTATCATATGAGGAATCATACGGGGGAAAGGCCGTATGTGTGTTCAGTGTGTGGACGAGGTTTTACTGTTAATACAATTTTACTGCGTCATATGCGGGTTCATTCCGGTGAAAGGCCGTATGTTTGTGTCACATGTGGAAAAGCGTTTTCCCAGTCGAGTACTCTAAATACGCATATGAAGgTACACGCATCATCGTCTAGATAcaatcaacaacaacaacagcaagTTCAACAACAAGCAACAATCGAAACAAAAACCCGAATGCCCCAATATCACACAACAAACGATAGCAACGCACGATTAATGCCGAACGATGCTCGGTTGATGCAAAACGACAACAACGTGGTTCGAATGATGAACGAGACCAATCGTATGATGACAAATGACGGTGCTCGAATGATCGACAACACTCGCCTTATGAGCAACGCCAATGACACTACAAGACTGATCAACAATGCCGATAATAACGGCCGTTTACTAATGAACGAGGCACCGCGATTATTGCCAAACGATCCCTCACGACATTTGGGCGTCGACAATTCGCGAATGCTCGACAACCGAATGTTGCCGAACGACAATCGAATGATGGTGCCCGAAACAAATGCGCGACACCTAAGCCTGGACAACTCGCGACAACAGCTAAACACGATCGAAAGCTCGCGAATTCTAAACGACAAATATTTAGTTAATTACGACCCATATCATAGAggccatttataa
- Protein Sequence
- MDNNLIKTDISSQFCANKICRACLNEDGEMRSVFLVDEANGQSMRWSEMLMGFSSVQISSGDGLPELICTQCAIQITRVFSFKQLCERSEATLRQYLGKPLPPPVPAQPIYQQSSAPVNSFKEEKHDDSNYDQFYLDSFGLDSDDSDDSDSKTDILDNVTTTELDGNDEKAIAKRQLLQMGKLHQHRMATKKKLMAGKISKSTAKKLIKRKTNQCNVCKKTFINLQSFRKHLRTHIEDRPYKCKMCPRGFTEENYLNNHMRTHIPEEQKPHECEICKKRFIHMSLLNKHLMKHSGEKPFVCKICNKGCYAENSLLKHMKIHEKKEGDPALLKHICDYCKREFSDSESLAIHIKQHTGDRPFLCNMCGKCFPQRFNLELHLRTHTGERPFVCEVCKNGYVSKASLKIHMRTHTNERPFVCDFCGKAFRQSGDLTSHKRLHGTEKPIECNICQKRFTTVMKLKYHMRNHTGERPYVCSVCGRGFTVNTILLRHMRVHSGERPYVCVTCGKAFSQSSTLNTHMKVHASSSRYNQQQQQQVQQQATIETKTRMPQYHTTNDSNARLMPNDARLMQNDNNVVRMMNETNRMMTNDGARMIDNTRLMSNANDTTRLINNADNNGRLLMNEAPRLLPNDPSRHLGVDNSRMLDNRMLPNDNRMMVPETNARHLSLDNSRQQLNTIESSRILNDKYLVNYDPYHRGHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01349845;
- 90% Identity
- -
- 80% Identity
- -