Snig016777.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sisyra nigra
Gene Symbol
-
Assembly
GCA_958496155.1
Location
OY292318.1:20849282-20858657[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00093 0.075 13.7 3.2 1 23 159 181 159 181 0.98
2 15 5e-05 0.0041 17.7 0.9 1 23 189 211 189 211 0.95
3 15 0.0021 0.17 12.6 5.3 1 23 266 288 266 288 0.99
4 15 0.0001 0.0085 16.7 5.1 2 23 295 316 295 316 0.97
5 15 4.6e-05 0.0038 17.8 4.3 2 23 337 359 336 359 0.97
6 15 4.8e-05 0.0039 17.8 7.3 1 23 413 435 413 435 0.97
7 15 0.02 1.6 9.5 3.6 1 23 441 464 441 464 0.95
8 15 7.6e-07 6.2e-05 23.4 0.6 1 23 469 491 469 491 0.99
9 15 3.6e-06 0.00029 21.3 0.8 2 23 503 524 502 524 0.96
10 15 2.8e-07 2.3e-05 24.8 1.4 1 23 531 553 531 553 0.97
11 15 2e-05 0.0017 18.9 1.6 3 23 565 585 563 585 0.92
12 15 6.4e-05 0.0052 17.4 4.6 1 23 591 613 591 613 0.99
13 15 7.5e-06 0.00061 20.3 1.5 1 23 619 641 619 641 0.96
14 15 1.5e-07 1.2e-05 25.6 0.3 1 23 647 669 647 669 0.99
15 15 8.8e-05 0.0071 17.0 0.1 1 23 675 699 675 699 0.92

Sequence Information

Coding Sequence
atggaaacaaCAAATGAACCGGAGCCCCCGatagtaattgaaaaaatatgtcGCTCGTGTATGAACGAAAGCGACGAGATGCAATCCTTATTTACTGCAATGGATATGGCTGGATTGCAAACACAAGTATCCGATATGCTTATGGCTTGTGCTTCAgtcaaaATCGAATCCAACGATGGCCTTCCCGGATTAATTTGTCAGCTATGTGTTCATCAACTGAGTAATGCTTACTCGTTCAAACAACAATGTGAAACAACCGACACTAAATTACGGGAATATGTTAATTTACCTCCGTTAACAACTGAGCCAAGGCGTACAATTAAAGAAGAAACAGAGTCgttaaatattattgtaaaaccTGATATCGATATGGGGGTTATGACTGAAATGTTCGACAACGATAACTACAGTGATAACGAATCAAGTGATTCAGATAGTATTAAACAAACTcgaaaatcaagtaaaaaatgTACGCATCGTTGCTCGCAATGTCTTTCGAAATTTGCCTCAAAAGCCGGCCTAAAGCAGCACATGCGAAAAcatgaaaaagaaaaacaaaaaaattattcttgctCTGTTTGTAACGCTTCATTTCCCAAGTCGAGTGATTTAAAGAAACACAAAACCGAGCATAAATCGGAATCAAACGACGTATTTAGTGACATAAAACCAGAATACAACGACGAACGTTCCGATTTATCCGAGACAAACGATAGGAGCGACGATCCTGATTTCACAACGGAACGCATTGGAGCGAAGACCCGGTCGTCGACTCGGAAAAGAGATGCTGAGGTATACGAATGCAATCATTGCCATAAAATATTATCGACTTTTAACGGTTTACGAATTCATAAACGTCGGCACACTGGCCAAAACCTGGCCCAATGCTATCTATGTACCAAATCATTCACCAAAACGAGTCATTTAAAGCGACATTTACTATCACATGGAATTGATAATTCAATGTTACACCAAGTAAAATCGGAGCCAAAATCGAAAATGACGTTACAGTGTGAGTTTTGTGATCGAAAATTTGTTTATCGAAAAAGTTTCACGCATCATATGCGTACGGAACATGCGATTTCCGATAGTGATGATATAACAAGTTTTGATTTGAACGTTAAAACGGAAGAATCCAAAGATGAAACGGCTGATAATAACGGAGATATCCCCGATATAGatccCGAGGAACCTGGGGAAATCACCAATCCAACCAATGAAGATGAAGGCCAAGAATTTGAATGCCATGTTTGCAATCATAAGTTTACCAGAGCCAATCATCTAACAAGGCATATGACCTTACATAGAAATGTCTTAATTCATAAATGTGATAGATGTGAGAAAGCTTATTTAACATCAGAACATTTACAGAAACATGTTCAAgagTATCATATAGATCGACCGTATGTTTGTACTGTATGCGATAAACCGTTTGCCCGCGGGGAACATTTGATACGGCATTTAAAAACACACGACAATACCGAAAATCCGGATGTCACTTCATTGAAATGTTCTGTTTGTGAAAAAGTATTCAACAGTAGTGAAAATTTGGCTCGCCATACCAAGCAACATTTGTTAAAAGACAAACGACACGTTTGCGAAGTTTGTAACAAGGCCTTTAATCGGCTAGACAATTTACGAACGCATCAAAGAGTTCATTCTGGAGTTAAAGATCCTGTACGACTTCACCTATGTATTTACTGTGGAAAAGAATTCAACAATTCAAGCAATATGatCGTACATATGAGACGACATACAGGCGAGCGACCCTACAAATGTACTGAATGTGGAAAAGGATTTCCCCGTTCTCACGATCTTAAATGCCATGAAAGAACACATTCCGGTGAACGGCCTTATTTATGTACTCTGTGTGGGAAATCGTTTAACAAAAGTAATAAACTGGTACGTCATACTCGAGTTCATACTGGCGAACGGCCGTATGTATGCAATTTATGTGGTCGAGCATTTACGCAGTCCAACGACTTGGCGTTACATATGCGAAGACATACTGGATCCCGTCCATACGCTTGTGGAATATGTCCAGCGAGATTTATTCAGTCAGGACAATTAAAAGCCCATCGACGTTCTCAAGGACACTGGGTTGAACAAGAAATTCATCAATTTCGAGGTAACAGGGTCGAACCTGTACACATTGAAGGCCTAGTTGAAACCCCAATCAAACACCGGAAACGTGCTAATACATCGAATAATGTTCCCGTAACTcctaattttgtaaaagatttcaATACACCGCAGCAACAACAACAGCAACAGCAGCAACAACCACAGCAGCAGCAAcaccaacaacaacaaccacggCAACAGCCCTCAATGGAATCACAAATGATGCCTAATGTTACTGATTCAAGCATGTTTCCAATGCATCCAATCGCAATTAGTACAAACGGCTTAACCATTACCCCATTAAGAGAATCTAATTCCGAAAACCAGCCATTAGCTAATGAACGTGAAACGTTTCAACCATCAACAAGCTCCACATTCACCCCACCACCAAACGTTTTAACAACGTCTACATCATATGGAACAAACGATAACTACAATTTCCAACAATTTGGTTAA
Protein Sequence
METTNEPEPPIVIEKICRSCMNESDEMQSLFTAMDMAGLQTQVSDMLMACASVKIESNDGLPGLICQLCVHQLSNAYSFKQQCETTDTKLREYVNLPPLTTEPRRTIKEETESLNIIVKPDIDMGVMTEMFDNDNYSDNESSDSDSIKQTRKSSKKCTHRCSQCLSKFASKAGLKQHMRKHEKEKQKNYSCSVCNASFPKSSDLKKHKTEHKSESNDVFSDIKPEYNDERSDLSETNDRSDDPDFTTERIGAKTRSSTRKRDAEVYECNHCHKILSTFNGLRIHKRRHTGQNLAQCYLCTKSFTKTSHLKRHLLSHGIDNSMLHQVKSEPKSKMTLQCEFCDRKFVYRKSFTHHMRTEHAISDSDDITSFDLNVKTEESKDETADNNGDIPDIDPEEPGEITNPTNEDEGQEFECHVCNHKFTRANHLTRHMTLHRNVLIHKCDRCEKAYLTSEHLQKHVQEYHIDRPYVCTVCDKPFARGEHLIRHLKTHDNTENPDVTSLKCSVCEKVFNSSENLARHTKQHLLKDKRHVCEVCNKAFNRLDNLRTHQRVHSGVKDPVRLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCTECGKGFPRSHDLKCHERTHSGERPYLCTLCGKSFNKSNKLVRHTRVHTGERPYVCNLCGRAFTQSNDLALHMRRHTGSRPYACGICPARFIQSGQLKAHRRSQGHWVEQEIHQFRGNRVEPVHIEGLVETPIKHRKRANTSNNVPVTPNFVKDFNTPQQQQQQQQQQPQQQQHQQQQPRQQPSMESQMMPNVTDSSMFPMHPIAISTNGLTITPLRESNSENQPLANERETFQPSTSSTFTPPPNVLTTSTSYGTNDNYNFQQFG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01349835;
90% Identity
-
80% Identity
-