Snig004719.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sisyra nigra
Gene Symbol
ZNF236
Assembly
GCA_958496155.1
Location
OY292314.1:18259649-18271420[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00025 0.02 15.5 1.1 2 23 148 169 148 169 0.97
2 20 0.0049 0.4 11.4 0.6 1 23 175 197 175 197 0.96
3 20 8e-06 0.00065 20.2 0.9 2 23 202 223 202 223 0.97
4 20 0.00055 0.045 14.4 1.2 1 23 229 251 229 251 0.96
5 20 0.0016 0.13 13.0 2.6 1 23 262 285 262 285 0.96
6 20 0.0027 0.22 12.3 3.8 1 23 308 330 308 330 0.96
7 20 2.8e-06 0.00023 21.7 1.5 1 23 336 358 336 358 0.99
8 20 1.7e-05 0.0014 19.2 1.8 1 23 364 387 364 387 0.97
9 20 0.00011 0.0087 16.7 1.1 2 23 397 419 396 419 0.96
10 20 5.4e-06 0.00044 20.8 2.8 1 23 514 536 514 536 0.98
11 20 2e-05 0.0016 19.0 0.8 1 23 542 564 542 564 0.98
12 20 0.0033 0.27 12.0 3.6 1 23 580 602 580 602 0.97
13 20 0.00011 0.0086 16.7 1.3 1 23 649 671 649 671 0.98
14 20 1.1 87 4.1 6.0 1 23 677 700 677 700 0.82
15 20 8.4e-05 0.0069 17.0 6.4 1 23 706 728 706 728 0.97
16 20 0.00041 0.033 14.8 4.7 1 23 734 756 734 756 0.98
17 20 4.2e-07 3.4e-05 24.2 1.6 2 23 1007 1028 1007 1028 0.97
18 20 2.2e-05 0.0018 18.8 1.0 1 23 1034 1056 1034 1056 0.98
19 20 1.5e-05 0.0013 19.3 0.8 3 23 1065 1085 1064 1085 0.98
20 20 0.022 1.8 9.4 7.9 1 23 1091 1113 1091 1113 0.97

Sequence Information

Coding Sequence
ATGAATTTCCTCGATAAAGATTTGATTATGTCCTATTCCAATCCACAAGAACCACTGGAAAATATAGAAACGGAAAGTGGCATTCCCAATGATGGAAGTTTAAATTTCTTCAATGCCagtgatataaaatatacattaaaatcATTGCCAGATGGAAATTTCGTCTTGACGACTAATGGGttatttgaaacaaatcaaAGCGAGGATAATAGCACGTACATTATTTGTACGACTTTAAATGATTTTGATACCACTTTACCTCAAACTACCTTTACACAAATAGAAAGCAACGAAAGCGATGCTTTGCCAAGtaaaatttttgtaaatgctATTCTTCAAGATGACTCATTGCCAATTTTATCGGATATACCAACGATTGCAGAacctgaaaatattttgaatcatACAACTAAAAGTCCTGAAaatgatGATATAGAAAACACTTGTTCGTATTGTAAGGAAGTGTTTAACTCTTTAAGAGCCCTTAAGCGACACGAACTTAAACATTTAGTTGAAAAACCACATAAATGCTCTCAGTGTGCAGCATCGTTTAACGTTGagagtAATTTGAATCTTCATAAAGCTATACATTCAGAAGAGGCTAAATGTCCTGAATGCCACAAAAAATTTTCCCGTATTGCAAGTTTACGAgctcatttaattattcatgaGGTCGATGAAAGTTTTTTATGTAAAGAATGTGAATATCCTTTTGATACATCGTTACAGTTAGAATTACATATGCATACCCATGCTAAAACGAAAGAGgcggaaaagaaaatatttatgtgtAGAATATGTCGTCAAACGTTTGCAACTAATGTTAAATACAAAACTCATATGCAGCAATTTCATAAGATACGTCGATTTAAAGCTAATAGACCCACAATGGAAtcacaaaaatcaaaatcgaaaCGTGTGCATCAATGTTCAAATTGCTCgagaagttttcaaaaattaagtcaattaaTTAGACATGACAGAACGCATACGGGCGAAAAACCTTTCAAGTGTTCAACATGCCAACGTGCCttttctcaaaataatactttaaaaattcatatgGCAACACATACAGGAGATAGACCATTTAAATGCCCTCACTGTTCTGCAGCATTTAGtcaaaaagGCAATCTTCACATTCATTTGATTCGACTGCATTCATCAGAGAATAATGATCTAATGCTCCCCTGTAACGAGTGCAGTTGCACTTTTCGAAAATTAAGCGCATTAAATGCCCATATCAATAGAATGCATGGACGTGTTGAAATGATGAATTTGCAAGACGTTATTAATGCAATACACTCGTTAAACTCGGCTTTCGAACCCACTAAAACTATTCCATCCAAAACCGATGCATTATCGACAGTAAATGAAACTCCGTTGCATGTTCAAGAACAAATCGCCGAAAGTGTTTCTGAAAGTTTGCTAGCAAATCAAACATCTTCTGTAAAATCAATCGCAATTGCTGACTGTCCAACGGCTGGCGTCGTCCGAAGACATTCTATTAAAACACGAGTCGCGGGAAGAATTCGATGGCATCAATGTGTTTTTTGTACcaaagaatttaagaaaccctCGGATCTTATTCGTCACCTTCGTACACATACCAAAGAAAAACCTTATAAGtgttcTATTTGTTCTCGAAGTTTTGCTGTTAAATCTACGTTACTATCACATTCGAGAATTCATAACAAACCAGATAAAACAAATCCACCTGCTACgAAAGTAACACACTTTTCATGTTTCCaatgtaaaaagaaatataaaactttaGAACAGTTGGAACTGCATTCAAAAAGACATATAATAGATTCGGTACAAAATATATTATCGACGATAGAATTAGATGATCCTCTTTTTATATCAGACGAAGgatttttaaaACCTTGCGTTTCTCCAAGAAAGCAGTTACTAGCCGAAGCTGGTACTGAACTAAGGCCCTACGTATGTTCTGTATGTGGTGCAGGTTTCCGTAAGCATAGTTATTTAAAGCAACACAAACTTATACACACCGAAGAACGACCTTATTCATGTAAAATATGCCAAAAaaattttaaatcccattatattttaagttgccACATGACAAGAACGCATGCAAAAAGTAGATTGCATAAGTGTGAAGAATgttcaaaatcttttaaaacgTCGATATGTCTACAAAGGCATATGACGCAACATAGCAATAAACGGCCATTTATGTGTCCTTAttgtaaaaaaacgtttaaagcTAAATGGAGTTGTAGGAAGCatatgcgaattcataaagTTGAAATTGCGTTAAAGcttaatgaagaaaaaaatactacCGAAACAAATATTACGTTCCCAGAAAGTATTAACGACATAAATAGTGATATTCTTACAAATACAATAGggGCTGAAGAAGTTGAGACAAACCTAGATAATTTGATGTCTACTGGAGTAATACAAACATCTACTTTAGCCGATTTAAATTCGAAAACATTATCTAAGgACGATAACGTTATTTATGAAATGGACGAAtcattaaataaacaattgtttggTTTAATAAGCGATGACAAAAATCTAGTCGATATGCAATTTCCTAACGGAATAACAGAAGAAGTATCCAACAATCAACTAATAAACACCTTAGTAGTAGCTGTAAACGATGTTAACGAAAGTAAAACCCAgaatgaaattttgaatcaaTCTCAACCCTTTACATTGATATATTCCATAAGAGACCCAAATGAACAAacGAGGATCACTGAAATACAAGATGTGATATGGTCGAATACTGACCCATCGGATGCAACATGCAAATTAGTCAATCCattaaataatagttttaatACAATCCAATCAGTTATTGAACCTTTAGAACCTGCAGAAAGTctaggagaaattttacaaCACGAACCTGTACAAAATGAAGAAACAAATGAAAGTCCAAAAACGTTACCTGAGAACGCAGCAATTAAAGCAAACAAACCAAAAGATGCTGCAGAAGCAAAATCGATTAAAAGGGCGATCGCAAAAAGCAAAAATGTGTGtcattattgtaaaaaatcgttttataaaCCGTCTGATTTAGCGCGACACATTCGTATTCATACTGGAGAAAAACCATTCCAATGCGAAATTTGCGAAAAAAGTTTCACGTTGTTATCAACATTACGAAGTCATAGTAAAGTTCACGACGAAAATAAAACGGAAGTATTTTGTAAGGTTTGCGCGAAAGGTTTTAGTACGAAAGGAAGTTTGAAAATTCATATGCGACTTCATACAGgaagtAAACCGTTTCAATGTCATTATTGTGAATTACGTTTTCGTACATCTGGCCATCGACAATCTCATCATCAAGCTCATATCAATGAGGCAGCACGTAAAAATGTGCACCCTAGTGAAACTATAACAAGGACACACAATTCCTGTGTTGgaaaactacaaaaatatttcaacgatGTTAAAATGGATGGCATTGAAGAAAATGTAAGCTTTAGAGTAAACCATTTAAAATACAATACGTAA
Protein Sequence
MNFLDKDLIMSYSNPQEPLENIETESGIPNDGSLNFFNASDIKYTLKSLPDGNFVLTTNGLFETNQSEDNSTYIICTTLNDFDTTLPQTTFTQIESNESDALPSKIFVNAILQDDSLPILSDIPTIAEPENILNHTTKSPENDDIENTCSYCKEVFNSLRALKRHELKHLVEKPHKCSQCAASFNVESNLNLHKAIHSEEAKCPECHKKFSRIASLRAHLIIHEVDESFLCKECEYPFDTSLQLELHMHTHAKTKEAEKKIFMCRICRQTFATNVKYKTHMQQFHKIRRFKANRPTMESQKSKSKRVHQCSNCSRSFQKLSQLIRHDRTHTGEKPFKCSTCQRAFSQNNTLKIHMATHTGDRPFKCPHCSAAFSQKGNLHIHLIRLHSSENNDLMLPCNECSCTFRKLSALNAHINRMHGRVEMMNLQDVINAIHSLNSAFEPTKTIPSKTDALSTVNETPLHVQEQIAESVSESLLANQTSSVKSIAIADCPTAGVVRRHSIKTRVAGRIRWHQCVFCTKEFKKPSDLIRHLRTHTKEKPYKCSICSRSFAVKSTLLSHSRIHNKPDKTNPPATKVTHFSCFQCKKKYKTLEQLELHSKRHIIDSVQNILSTIELDDPLFISDEGFLKPCVSPRKQLLAEAGTELRPYVCSVCGAGFRKHSYLKQHKLIHTEERPYSCKICQKNFKSHYILSCHMTRTHAKSRLHKCEECSKSFKTSICLQRHMTQHSNKRPFMCPYCKKTFKAKWSCRKHMRIHKVEIALKLNEEKNTTETNITFPESINDINSDILTNTIGAEEVETNLDNLMSTGVIQTSTLADLNSKTLSKDDNVIYEMDESLNKQLFGLISDDKNLVDMQFPNGITEEVSNNQLINTLVVAVNDVNESKTQNEILNQSQPFTLIYSIRDPNEQTRITEIQDVIWSNTDPSDATCKLVNPLNNSFNTIQSVIEPLEPAESLGEILQHEPVQNEETNESPKTLPENAAIKANKPKDAAEAKSIKRAIAKSKNVCHYCKKSFYKPSDLARHIRIHTGEKPFQCEICEKSFTLLSTLRSHSKVHDENKTEVFCKVCAKGFSTKGSLKIHMRLHTGSKPFQCHYCELRFRTSGHRQSHHQAHINEAARKNVHPSETITRTHNSCVGKLQKYFNDVKMDGIEENVSFRVNHLKYNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-