Snig004809.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- -
- Assembly
- GCA_958496155.1
- Location
- OY292314.1:19893989-19894423[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.3e-08 9.6e-05 22.2 0.0 7 40 20 53 18 58 0.90
Sequence Information
- Coding Sequence
- ATGAGGGTGTATAAAAGAAAGTCAGAGCGGGCAACACAAAGCCAAGAAGTGTACGAGTTAGCAGCAGCTgaagttttagaaaaaaaatttagtattcGGAAAGCTAGTCAGACTTTCGGATTATGTCACGTCTCTCTTTATAGATAcataaagaaaaagaagaataaTGAAAGATTAAGAGTTGGTTATGTTAAGCCTAGACAAGTATTTACCGCAGAAGAGGAAGGTAAGATAGCTTCCTACCTACTCAAGTGCGCTGATATATATTTTGGACTACTTCCTATAGAAGTAAGGAAACTAGCTTACCAATGCGGTGTGCAGCTTAGTGCTAAAAACATTCCTCCTTCTTggaatcaaaataaaatggCTGGTACTGACTGGTTCCAAAATTTTATGCGCAGAAATTCACATTACTatactgcaacatcaagataa
- Protein Sequence
- MRVYKRKSERATQSQEVYELAAAEVLEKKFSIRKASQTFGLCHVSLYRYIKKKKNNERLRVGYVKPRQVFTAEEEGKIASYLLKCADIYFGLLPIEVRKLAYQCGVQLSAKNIPPSWNQNKMAGTDWFQNFMRRNSHYYTATSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723009; iTF_01415777; iTF_00723010; iTF_00723011; iTF_00723006; iTF_00723008;
- 90% Identity
- iTF_00723011;
- 80% Identity
- -