Snig018222.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- -
- Assembly
- GCA_958496155.1
- Location
- OY292319.1:2838218-2838977[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.9e-10 4.5e-07 29.7 0.0 3 36 16 49 14 58 0.85
Sequence Information
- Coding Sequence
- atgcccagaaattgcacaagaaaaacaacaccgcggtacacaattgaaaatctccaacgcgcgagacatgatgtgagctgtcgacgactttctttaagcaaagcagcaaccaaatacggagtaccaaaatcaacattatttcgacaagtgcatctagaagaatttaagaaaccgaaaaaaggacgacaccctgtcttcaatcataatagatcactacgaaagattggctttacatttgctgaagccaacaaattgagccataaatttaaccaagaatctcagatggctggtaaagactggtactattcattcatgtctcgacatccctccatcagtctacgaactccagaagcaacgtcacttaaccgaattaaagcgttcaatgccaccgaaattaaattgtttttcgatcaactagaagccctccaacgaaaatacaattttcctagtcaccgtatattcaacattgatgaaaccggtatcaacactgttcaacgtaattcgaaaatattggcgccaaaaggtttgaagcaagttggaaaagcgacaagcgctgagcgcggtatcaccactaccgttgtttgtgcgataagtgcaaacggtatatatgtacctccaatgtttatcttcaaaagaaggcgtatttGTGAACTTAATGGCACTAATAACGGCTATGTTTGGCACGGTTTTTGA
- Protein Sequence
- MPRNCTRKTTPRYTIENLQRARHDVSCRRLSLSKAATKYGVPKSTLFRQVHLEEFKKPKKGRHPVFNHNRSLRKIGFTFAEANKLSHKFNQESQMAGKDWYYSFMSRHPSISLRTPEATSLNRIKAFNATEIKLFFDQLEALQRKYNFPSHRIFNIDETGINTVQRNSKILAPKGLKQVGKATSAERGITTTVVCAISANGIYVPPMFIFKRRRICELNGTNNGYVWHGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -