Snig001878.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- -
- Assembly
- GCA_958496155.1
- Location
- OY292313.1:30651038-30652936[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-12 4e-09 36.3 0.0 2 43 11 52 10 54 0.89 2 2 5 5.8e+03 -2.7 0.0 18 27 465 474 462 479 0.80
Sequence Information
- Coding Sequence
- atgcCTCCGATCAAAAGGAAGACCTGGGACCACGCTGCAATGATACAGGCTGTGAATGCAGTACGAAAAAGCGAAATGGGCTACTTAAGAGCTGCCAAACGATTTGGTGTTCCTAAGGGTACCCTTGAGCGCTATGTAAAAAAAGATGGCCATGCAAAAGATCTTGTCCAGGTTCGTATGGGAAGACAACCAGCCTTACCTATTGATTTAGAAGCCGAGCTGGAAAGTTATTGCAAAGAAATGGATAGACGATTTTATGGCTTACGTCTGAAGGATATCAAATACATGGCGTTTCAGTTGGCTATTAAAAACAATCTAAAGCATCCTTTCAGTGTGACTAAAGCCTCTGCTGGTAAAAAATGGTTACGTGGATTTTTGAAGAGACATCCTACATTATCAATTAGGACACCTGAAGCAGTTTCTGCCGCCAGAATAAAAGGATTTAATCCAGCTGCAGTcgctaatttttttgatttgtatgaACCTGAACTTGGTAAGATAAAATCCGCTCCACACAGAATCTACAACGTCGACGAGACAGGAATCACAGTTGTTCAACATAAACGTTCCAAAGTTGTCAGTGTGAAAGGTAAGAAACAGGTTGGTGCGTTGACATCCCTGGAAAGAGGAAAACTCATGACTATAGTGACCTGTATGAACGCTTGTGGTACCTACGTTCCtccattaataatttttccaagGAAAAACATGGCTCAAGAGTTAATGGATGGTGCACCAGCAGGTTCAATTGGCGATTGTCATCCCTCGGGTTGGATTCAGACTCACCTATTCACAAAGTGGTTTCAGCATTTTATCAACTTTACAAAGCCAAGTAAAGATGACCCAATTGTATTGGTTTTAGATGGCCATTACACACATACACGAAACATCGATGTGATCAATTTAGCTCGAGACAACAACGTGATAATCTTTTGCTTGCCGCCGCATTGCACACACAAAATGCAGCCTATGGATGTAGCATTTATGAAGCCACTAAAAGCTTATTACTCCCAAGAAATTGAAACTTGGCTGCGTAATAATCCGGGACGCACACTGACAAATAAATACGTGGCAAGATTGTTTGGTACGGCTTATGAAAAAGCTGCTACTATGACCAACTCCTTAAATGGATTTCGCAAAACTGGGTTGTTTCCCTGCAATCGACATATTTTTACAGACGAAGAGTTTTCAATCTTTGATGAAGAGGATCAAGAGCAGAGAAATGAAGTGAACGGAAATCTAGAGAATACACTTTCTTCGATTGAAAACCAATTAGAGCCAACTGAAGTGATATCCAACAgcgaaaattcaaatgaaaatcagAGAGAGGAAATCGATTTAGTAAATGAAATTCCTCCTGATGAGTCTCAAGGATTGGCATCTTCTAACGGATCATCAAGAACTGCTGCTAGTGTTTATGATAATCCAGTACCTAGTACATCGTCTTGTGTCTCACCTTTTGCGCTCAACCCAGTACCCAGGATGCATAAGAACAATTCTTCTTCTAAAAAAACTCGAACTGGAGCAGCTTCTATAATTACGGCTTCTCCGTATAAGAATTCACTGGAAGAATCCCTAAATAAAAAgcgagaaaaagaaaataagaaagaGCAGAAGAAACGGACACATACAAAACAGCagacaacgaaaaaaaaagcttttaaaaagaaGAAAGTTGAAGAAGTTACTTCCAGTTCCGAAGACGATGACATGCCTGAGCTCGCAGATAGCAGTGGAGATGAATATGATGCTGAATGTCCCTACTGCAGCGGAACCTTCTCACAAGATACAAGAGGAGAAAAATGGGCAAAGTGTCAAGTTTGTTTTAAATGGGCTCATGAGGATTGTGGAGATATAGCATCGAAtcgttttttgtgttttttatgtTTAGATATGTAA
- Protein Sequence
- MPPIKRKTWDHAAMIQAVNAVRKSEMGYLRAAKRFGVPKGTLERYVKKDGHAKDLVQVRMGRQPALPIDLEAELESYCKEMDRRFYGLRLKDIKYMAFQLAIKNNLKHPFSVTKASAGKKWLRGFLKRHPTLSIRTPEAVSAARIKGFNPAAVANFFDLYEPELGKIKSAPHRIYNVDETGITVVQHKRSKVVSVKGKKQVGALTSLERGKLMTIVTCMNACGTYVPPLIIFPRKNMAQELMDGAPAGSIGDCHPSGWIQTHLFTKWFQHFINFTKPSKDDPIVLVLDGHYTHTRNIDVINLARDNNVIIFCLPPHCTHKMQPMDVAFMKPLKAYYSQEIETWLRNNPGRTLTNKYVARLFGTAYEKAATMTNSLNGFRKTGLFPCNRHIFTDEEFSIFDEEDQEQRNEVNGNLENTLSSIENQLEPTEVISNSENSNENQREEIDLVNEIPPDESQGLASSNGSSRTAASVYDNPVPSTSSCVSPFALNPVPRMHKNNSSSKKTRTGAASIITASPYKNSLEESLNKKREKENKKEQKKRTHTKQQTTKKKAFKKKKVEEVTSSSEDDDMPELADSSGDEYDAECPYCSGTFSQDTRGEKWAKCQVCFKWAHEDCGDIASNRFLCFLCLDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01091644;
- 90% Identity
- iTF_01348769;
- 80% Identity
- -