Snig012784.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- lov
- Assembly
- GCA_958496155.1
- Location
- OY292316.1:45253175-45255748[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-16 2.3e-13 49.8 0.0 1 44 419 462 419 463 0.96
Sequence Information
- Coding Sequence
- ATGAGTATAAACGACGATAACCAGGAGGCCCCGCATTACTCGCTGCGGTGGAACAACCATCAGGCGCACATGTTGAGCTCCTTCGAGGCGCTGCTGCAGGCGTCCACCCTCGTCGACGTCAGCCTGGTGTGCGCGACGGCCACGATTCGGGCCCACAAAGTGGTGCTGAGCGCGTGCAGCCCCTTTTTTCAACAAGTATTCGCGGAAAATCCGTGCAAACATCCTGTGATCGTATTACACGAGTTTAGCGAGTGGGAAGTGCAAACGTTAGTGGACTTTATGTACCGGGGGGAGATCAGTGTTGGTCAGGAGCAGCTACCGTCGCTGATTCGCGCCGCGGATAGTCTGCAAATTCGGGGTTTAACGCCACGAGAGACAACTCTGAGCCAACAACCGACGCCATCAACATCACCGCATGACAGTGAAAGAAGTTCTCAGTGTGAGACTTCGTCGACTATCGCGAAGCTGCCTCATATGTCtcatttaaatttcgctgagaCTCTATCAGCGATGACTTGTAGTGAAATTCTTTGCGGATCTCCACTGCCGCGAAGAAAACAAGCGAGACCACGACGCCGTTCCGGTGAACTTCCCAGTCCTCAAGACTTGAGTAGTAAACCACTACTGGCAGCAATAGCTCAACCACCAACAGTACCTACCGAAGAAACCGCCGAGGATCTCTGCGTGAAAAAGGAACGAGCTTCAAGCAGCCCATCGCCCAATCTCCAACCCTCAGTTCGACATTCATCTCCAGTCCATCGATCAGCCACTCCAATCCCTCCACCTCCAGCCCACATTCAAAGTAATCTACCCCATAATAACGTATCACACCATCCTCGACCGAAACAACCAGAAACACCACCTCCACCACCTCCACCACGAAGTCCACAACCTGACCATTTAGACTTTCGAATCGGAAAAGACTATGGCCAGTCTCCACCGATGCATTCGCAAGACTATGGACTTCCGCCGCCGCCGCCACATCCGCCCGGCTTAGGTCAACATTCGCCGATGTCATTTCCGCCAATGCCGTCCGTCTCGGCGCTTGCTATGACCCAACCACATTCGAAATTTTTTGGGCTGGATGCTCCGATCGGACTGTTTCAATCTGGACTGGATGCTGCGTGCCGGAATCCCTTACTGGACATGACGGCGCCGAGGAATTTATCCGATCCACAAATGTTCGTGAAAAAGAAAATGGGGAGGCCTAAAGGACAGCATTCGGCGCCGCGTGGAGGACCACCTCGTTCATGGACGAATGGTGAACTAACGCTAGCGCTTCAACAGGTGTGGAACAAACGGATGACGACGAGCCAGGCGTCTCGAGTCTACGGAATCCCCTACAACTCCCTGCTGATGTATGTGCGTGGTAAATAcggtaaaagtttaaaattagaaCAATTACGAAAAGACTGTACGGGTAACTCGGGAGTGCCGTTAGACATGATGGCTCTGGGCGGTAGCAACAGCCCACCGGGCGACTCGGACCGCAGTGATCGGGAACACCATCGGGACCGCGATCGAAGTAGTGGCCACGTTGAGGCAAACGAAACGAATAACAATTCACGCGCGCCTTTAAGTCTCGTTAGTGACGCAAGTCCGGACCTGGGCTCCATACCGGCCTCGATGTTCAACCACTTTCCGCACAACTTCTATCCAGATTTCGGGGCCGGATTCCCCATTCCGGTGAACATGTTACACCTGTTACCCCCCACCGATAAACTTCGCGGGGATCCTTTCGGACATTTAACGTTGGACGATGACGTGAAAAGTGGTAGTGGTGGAGATCACGACTTAAATAACTTGGGTAGTATCGCCTCAATGACCGAGTCGTCGGGTAAAGAAACACCACCGTCGTCAATCGAGAGTACGCTTAGGCCCGAAATCGCACAACACAACGGACAAGACTAG
- Protein Sequence
- MSINDDNQEAPHYSLRWNNHQAHMLSSFEALLQASTLVDVSLVCATATIRAHKVVLSACSPFFQQVFAENPCKHPVIVLHEFSEWEVQTLVDFMYRGEISVGQEQLPSLIRAADSLQIRGLTPRETTLSQQPTPSTSPHDSERSSQCETSSTIAKLPHMSHLNFAETLSAMTCSEILCGSPLPRRKQARPRRRSGELPSPQDLSSKPLLAAIAQPPTVPTEETAEDLCVKKERASSSPSPNLQPSVRHSSPVHRSATPIPPPPAHIQSNLPHNNVSHHPRPKQPETPPPPPPPRSPQPDHLDFRIGKDYGQSPPMHSQDYGLPPPPPHPPGLGQHSPMSFPPMPSVSALAMTQPHSKFFGLDAPIGLFQSGLDAACRNPLLDMTAPRNLSDPQMFVKKKMGRPKGQHSAPRGGPPRSWTNGELTLALQQVWNKRMTTSQASRVYGIPYNSLLMYVRGKYGKSLKLEQLRKDCTGNSGVPLDMMALGGSNSPPGDSDRSDREHHRDRDRSSGHVEANETNNNSRAPLSLVSDASPDLGSIPASMFNHFPHNFYPDFGAGFPIPVNMLHLLPPTDKLRGDPFGHLTLDDDVKSGSGGDHDLNNLGSIASMTESSGKETPPSSIESTLRPEIAQHNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01348997; iTF_01349788; iTF_01349554;
- 90% Identity
- iTF_01348997;
- 80% Identity
- iTF_01348997;