Snig004869.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- bab1
- Assembly
- GCA_958496155.1
- Location
- OY292314.1:21093750-21103913[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-17 1.4e-14 53.8 0.0 1 43 69 112 69 114 0.95 2 2 1.9 2.3e+03 -1.4 0.9 6 15 203 212 202 225 0.88
Sequence Information
- Coding Sequence
- ATGCCACATCAAAGATACGTTACTAACATTATTATGgcTAAGTTGTTAGAGTCTTCTCACGCTTGGCTCGGCGCCTCAACTTCGTCCATAGCCGCAGACAGCTATCAATACCAGTTGCAGTCCATGTGGCAAAAATGCTGGAACACCAATCAAAGTTTGGTTCACAATTTACGATTTCGTGAACGAGGTCCGTTGAAATCGTGGCGACCAGAAACGATGGCCGAAGCCATCTTTTCGGTGCTCAAAGAAGGACTATCGTTATCGCAAGCTGCTCGTAAATATGACATTCCATATCCGACTTTCGTTTTGTATGCGAACCGCGTTCACAATATGCTGGGTCCGTCGGCCGACGGAGGCGCCGATTTACGTCCAAAAGGCCGCGGCCGACCGCAACGCATCTTATTAGGGGTTTGGCCCGATGAACATATTCGTGGTGTAATACGGGCAGTTGTTTTTCGGGATACACATCATCATATCAAAGAAGAAGCACATTTAGCAGGATATCCAAGATTACAtGATGGATTGAGCATACATAGTTATGGTAATCCTGGGTCGTGCAGTAGTAATGGTGGACCTGATCCGAGCGTTTCTCCTGGCTCGGCAGCTGCCGCTGCTGTTGCAGCCGTAGCGCAAGGTTTCCGACAACAAATGTGTAGTATTGTAGCAGCAGCGTCTCAACATCATGGAGGTGCACTAGGTGCGCTTTTACCTGGAGGAATGGGAGGTTTGGGAGGTGGAAGTGGTTCTCGAGGGAGTCCCGCAGACTCGGCGCACGATTTGCGTATTAGTCCGACGGCTTCACCCTTAGACACACCGTTATCGTCACCTTTAGCTTTAGAGCCAGCATTAAACCTTGCCACTCTCGGTGGTAGCGTTGAAGTTGGTATCGGTGTTTCAGGCATGACATACAAACCTTCCAGAGACTTTTCGTCGCCGCGACCAGAAAATTTATTCCAGGATGACATTGAGGAGCTAGTAAAAAGTCCGTTACAATTAACATCACCGCGAATGTCGTTATCAGAACCAAAGGACGTGTCGATAAAAATGGAGCCGTTAACAGAATGTAGGGGTGAATGA
- Protein Sequence
- MPHQRYVTNIIMAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHHHIKEEAHLAGYPRLHDGLSIHSYGNPGSCSSNGGPDPSVSPGSAAAAAVAAVAQGFRQQMCSIVAAASQHHGGALGALLPGGMGGLGGGSGSRGSPADSAHDLRISPTASPLDTPLSSPLALEPALNLATLGGSVEVGIGVSGMTYKPSRDFSSPRPENLFQDDIEELVKSPLQLTSPRMSLSEPKDVSIKMEPLTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01060559;
- 90% Identity
- -
- 80% Identity
- -