Snig004134.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sisyra nigra
Gene Symbol
Jarid2
Assembly
GCA_958496155.1
Location
OY292314.1:5520628-5527563[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.3e-21 4.8e-18 65.5 0.0 6 89 1090 1171 1086 1171 0.93

Sequence Information

Coding Sequence
ATGCCTGTGAGCCGCAGTGATAGTAAAAAGAAGCGTCGTAGTGACGATGATAACGCGATTGATTCACTATCGGATAGTCCTAAAAGGACGAAGGTTCATGCGCAACGAAAGTTTGCTCAAGGTGCTGCTCTAGTCCCCAGTGCTTTGCCCCAGTTCAAGGATGTGGACAAGGACAAGCCGAAGCCGGCTGCAGAGTCGACCCCCATTGACCTGCTCCCGAGCAAACGTCCCAACACCGAGGACTTCCTGACTTTCCTTTGTTTTCGGGGTACCTCAATCCTACCCCCAAgtctagatttttttaataacgccCACACCGACGACTCGGCCAATTCTCGTTCGAATATCAAACTTGAGGCGAATAAATTCGAAACCCACAACGgcgataaaaatattgaaactagTCCAAACCAACCTCCCGATCGACCCTTTGTCGCATTTGGAGTCCGTAAACGAGCCGATCCATTCGCCCATAGTCGTTTAGATCGTAACCGACGCCATGCTCTCACAGTCCAGGCCCTGCGTCGTAAATACCAGGACCAACGAATGGCCAAAATCCGGGCTGTGGCCATTAGCCAGAACAGCGACCTACCCACAGTGAAAACTCGAGCAGCCATCCGTAAAGAACCGAAAACTACCAAAAAGATTCCTAAAAAAACACCAGTCAAAACACCCACCCCTAAAAAACCTCCCGTTAAAACACCCCCAAAACCGAAACCCCCTGTTAAAAGTGTACCCCCAAAACGTACAACCATGGTCTCGAAACGTGCAATGCGTCTACGAAGTGGAGGACGAATCATTATTAAAGAAatcaaaaccattaaaaaaaaacctatacCTCCAAAACGTCCCGTACCAAAAGCTACCCCAAAGAAAAAAGCTCAAAGCTCATCAGAATATAGTTCAGACGATGACGAACCTCTGGTCGAAACAtgtaaaaaacttaaacaacCCCCACGAGTTCGGAATCCACCGGTTAAAAGAGTAATCCAGAAGAAGatcattaaaaagtttattcGAAATAAACGATGTACCCGATCGAATGCTAACGATATAAAATCACAGCAAAGACCGACTCGAAAAACGAAGGAAGCAGCAGCTCTCTATATGGAACTTCTTGGACGAAAGCTCGTCCAAGACGCCGAGGTCGATGAGGACACTTTATCTATCGATAGCTTCCCCGAGCTTCCGAATGTAAAACGAGCAGAACAACGCGAAAATGAAATCAAAGCTCAGTCCCGAACTCGTGCTGAAACCCGAAACACCCCAACGACCGATCCCAAACCGAAGCCAATCGAGAAAAAAGatcaaaaacccaaaaaatcGATAAAAGCTCCCGAAAGCCCCAAACCGGAAAATGACCAGGAAAAAACTCCTCGTCGACTATCACTTGTTGAAAGCTCGAAAAAACTTGTCAAACCCCCGAATCGTAAATCTGAAGAGATTTCAACGATTAAAGCTCCCGAAACTCGAAACAGTAAAATCCGAACCAGATCTCAAAAAGTCGCTCCCGAACCAAAGAAAATTCCGGTTAAACGAAAAGCGTCTCCGACTCCATCGGTACGGCCAACAACTCGTCAATCGAAAGAACAAGAGAAACCTGAAGAACCCATCAAGAAGATCATCGAAAAACCGGAGAAACCTACGAAAAAATCGACCCCTCCAAAACTTTCAACACCTCCCAAAGCATCCTCATCCGATAGTATGAAAGAATTAGCCTTTAGCGATTCAGACGAAGAACCCTTAGCCAGTAAAATCAAAACGGAGATCAACGAGATCATCTCGAAAACATGCGCCAAAGACCAAACATCCAACGTCTCATCGTCAACGTCGAAGCCTGACGAAAGTAAATTTCGAGTTTCCGATTATAACGACGACGTGAAAGAAGAAACCGACTCGAACAAGGGTAAATCGACCAAAAAACCGACCAAATCTACGGAATGCACCCGTTCCGATTTACTGTGTAAAGATGTGGGCCGTCGATTCGGGAAGGGGAAGGTGAATATGTCGAATGAACAAATCGAAAAATGGTTAAATGACGCCGATCAAGAGCTGAAAAATCTCCAGAAGAAAACGGATGAGAAACCGAAAATTTCCTCGCCCGAAACACCAACGAAAAGTAGTCCAGAAGAGGTTAAAACTGAGTCGGAAAAACGGCGGAATATCTTTCCGCAACGACGACCAATTATTAATAAGGCTAAAGAACGGAAGGAGACGTCGAGTTCTAACGCGTTTTCTCCCGATAATGAGAGTAGCGTTTATGCTTTCGAAGCTGATTCAGAAGCTCCGATTAACACGCCATTTAGACGGCATTCGCGAAGACCTTCGAGCACGGCCACATCGAAATCAGAAGATGAAATTGGAAAGCAAGCCTCCGAAGATGAGGCTAAAAAATCGGGAGTGAAATTTCGGATTCCAAGCGTCTTTAAACACGATGATGTGAAATCATCGACCACAACGACACAGGGACAGCTTTCGTTAACTCTCGGTCCCGATAGTAATACGAATCAATGCGCTTCGATTGCAGTTCAAGTTAATATAAGTGGAAATCTTGACGAAACTGTTGGTCTAACGACTGATCTAGGAGATGATAATGATGAAGGACATCTATTCTATATTCCACTTCAAACGAATAAGACGTCTGTAACTGACCAGCAGGTCATTCAAGGAGTTGCTGTGAAATTAGGAACAACAGGAGCAAATGGTCCGAATCAACGAGTTATAATGCAAGCAAAACTCGTTACAAAACCTTCAACGTCATCTGGAACTGGAATATTCCCTAATAAATCTCTGCTTCCGGCATCACAACGTACATCCAATTCCACATCCATGAGTCCTCCCGTGGGAACCGTTCAACCATTCACGTCTAAACCTCTCGAATCAAAGCCCGCTGAAAGTGAAAAGGATCGCCCTAAAACTATTTCTAGTCCCTCAACATCACGCACAAACATTAAACGAACCCCTAAAGCAAAGACGTCCTCGGCATTTTCGATATCCCCAGCCAGCTCTCCGGCGAAAAATTTGTTCACTTCAGGCCCCGCTCAAATGGTTGCAGCGCCCACGTTCTATCCGACTGCAGAGGATTTTCAAGATCCACTtgagtatataaataaaattcgaGTGACCGCTGAAAATTTTGGGCTTTGTCGTGTTGTTCCACCGGCTGATTTCAAGCCAGAATGTAAAGTGAGCGATGATATGCGATTTACGGCTTACAATCAGTACGTGCATAAGATGCTTCAACGTTGGGGTCCTAATTTTCGTGAGTTGACGGCGATCAAGAAATATTTGGCTACGCAAAATATTACTTTAACACAAGCACCATGGattGGTGGAATGGAGATTGATTTACCACGCTTGTATCAAACAGTACAATCACTAGGAGGTCTCAAAGAAGTGATTGAAAAGAAGAAGTGGTCGCGCGTATCTGAAATCTTACGTATTCCAAAATCAGCGCAAGATCGCGTCACAAAGTTAGACGATATTTATTGTAAGTTCTTATTGCCATATGATACATTGTCACCGGAAGAGCGACAAAAGCTACTCAATGAAGTGGACGTGGAATGGGAGGCCCGACAGAAAAAACGGGAACAGGCTCGCGACAATCCCGAGACAAACAGTGATCAAAAAGAAGACGAATCTGACGAGGAGTCAGAAGACGGGGAAGACAGTGAGTGTATCGTAAGAGGTCGAAGCATGGCGTTGAATGCATTTTATCGAATCGCCCGTAATACCATGAGCATGTGGTTCAAGACTAACGAACCATCCGCCAATGAAGTCGAAACCGAGTTTTGGAAGTATGTGAATGAACGCACGCATCATTTGTGTGTTCATTGTGGATCGATCGATTCGGGAGGATATGGATATGGGTTTCCATGTGTGAAGACCAGTCCCTTTGCACGGCATCCTTGGAATTTGAAGGTTTTGACGAATAATGCTGGATCGATTTTGCGTTCGATGGGCCCGATTATGGGGGTCACCGTACCAACTTTACATGTGGGAATGGTATTTAGTGCTTGTTGTTGGTATCGAGATCCTCATGGGTTACCATGGATTGAATATTTACACACAGGAGCTAATAAGGTCTGGTATGGAATCCCTGACTCCCAGAACAATGCTTTTCGACAAACCCTAAATAAACTTGTGCCAAATTTATGCCGTAAAACTCCTGTTTGGCTCCCGTCAGACACAGCTATGGTACCTCCAAATGTTCTCGTTCAaaacaatgtttctttatgCCGTACCGTGCAAGAACCTGGtcaatatattatagtttttccTAAAGCTTTTACGTCGAGTATTTGCACCGGGTACACCGTGTCGGAGAGTGTGTTTTTCGCTCAACATTCCTGGTTGGATTATTCCGAACAAATCTTCACGGAACTGCGGGAAAGTTGCGAGCCGTCAATGTTTTCACTCGAACGTTTACTTCTAAGCATGGCCTCGGACAGTCGTTGTCATGTCGATTTATTAAAGCGAATTTTACCGGGGATCAAACAAATTCGGGACAAGGAGCAACTGGATCGTGAACGACTACGTAATCTGGGTGTAGCGACCACCGAACGTTTACCTCAATCAAACAAAAAACGAAAGCAAGCCGATATGGATGGTGAATATTTATGTGAGGTTTGCAAGAGTAACCTCTACGTCTCGTTGGTCACTGAAATCCAAGACGACGAAGTGTATTGTCTCACTCACGCCGCCGACTATGTGTCGAACAATAAAATCGCGACGAAAGATTTGAAATTGATGTACACATTCACCGACGAGGAACTCGATGAGATCGTCACCAAAGTCGTTACTCTCATCGAAACCAAAAGCCAAAAgaagaaataa
Protein Sequence
MPVSRSDSKKKRRSDDDNAIDSLSDSPKRTKVHAQRKFAQGAALVPSALPQFKDVDKDKPKPAAESTPIDLLPSKRPNTEDFLTFLCFRGTSILPPSLDFFNNAHTDDSANSRSNIKLEANKFETHNGDKNIETSPNQPPDRPFVAFGVRKRADPFAHSRLDRNRRHALTVQALRRKYQDQRMAKIRAVAISQNSDLPTVKTRAAIRKEPKTTKKIPKKTPVKTPTPKKPPVKTPPKPKPPVKSVPPKRTTMVSKRAMRLRSGGRIIIKEIKTIKKKPIPPKRPVPKATPKKKAQSSSEYSSDDDEPLVETCKKLKQPPRVRNPPVKRVIQKKIIKKFIRNKRCTRSNANDIKSQQRPTRKTKEAAALYMELLGRKLVQDAEVDEDTLSIDSFPELPNVKRAEQRENEIKAQSRTRAETRNTPTTDPKPKPIEKKDQKPKKSIKAPESPKPENDQEKTPRRLSLVESSKKLVKPPNRKSEEISTIKAPETRNSKIRTRSQKVAPEPKKIPVKRKASPTPSVRPTTRQSKEQEKPEEPIKKIIEKPEKPTKKSTPPKLSTPPKASSSDSMKELAFSDSDEEPLASKIKTEINEIISKTCAKDQTSNVSSSTSKPDESKFRVSDYNDDVKEETDSNKGKSTKKPTKSTECTRSDLLCKDVGRRFGKGKVNMSNEQIEKWLNDADQELKNLQKKTDEKPKISSPETPTKSSPEEVKTESEKRRNIFPQRRPIINKAKERKETSSSNAFSPDNESSVYAFEADSEAPINTPFRRHSRRPSSTATSKSEDEIGKQASEDEAKKSGVKFRIPSVFKHDDVKSSTTTTQGQLSLTLGPDSNTNQCASIAVQVNISGNLDETVGLTTDLGDDNDEGHLFYIPLQTNKTSVTDQQVIQGVAVKLGTTGANGPNQRVIMQAKLVTKPSTSSGTGIFPNKSLLPASQRTSNSTSMSPPVGTVQPFTSKPLESKPAESEKDRPKTISSPSTSRTNIKRTPKAKTSSAFSISPASSPAKNLFTSGPAQMVAAPTFYPTAEDFQDPLEYINKIRVTAENFGLCRVVPPADFKPECKVSDDMRFTAYNQYVHKMLQRWGPNFRELTAIKKYLATQNITLTQAPWIGGMEIDLPRLYQTVQSLGGLKEVIEKKKWSRVSEILRIPKSAQDRVTKLDDIYCKFLLPYDTLSPEERQKLLNEVDVEWEARQKKREQARDNPETNSDQKEDESDEESEDGEDSECIVRGRSMALNAFYRIARNTMSMWFKTNEPSANEVETEFWKYVNERTHHLCVHCGSIDSGGYGYGFPCVKTSPFARHPWNLKVLTNNAGSILRSMGPIMGVTVPTLHVGMVFSACCWYRDPHGLPWIEYLHTGANKVWYGIPDSQNNAFRQTLNKLVPNLCRKTPVWLPSDTAMVPPNVLVQNNVSLCRTVQEPGQYIIVFPKAFTSSICTGYTVSESVFFAQHSWLDYSEQIFTELRESCEPSMFSLERLLLSMASDSRCHVDLLKRILPGIKQIRDKEQLDRERLRNLGVATTERLPQSNKKRKQADMDGEYLCEVCKSNLYVSLVTEIQDDEVYCLTHAADYVSNNKIATKDLKLMYTFTDEELDEIVTKVVTLIETKSQKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01349412;
90% Identity
-
80% Identity
-