Basic Information

Insect: Siphlonurus alternatus
Gene Symbol: -
Assembly: GCA_949825025.1
Location: OX463788.1:63813456-63829997[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.33 42 5.5 0.9 1 23 183 207 183 207 0.90

2 14 0.12 15 6.9 4.1 1 20 362 381 362 386 0.90

3 14 0.023 2.9 9.1 0.7 2 23 443 465 442 465 0.96

4 14 0.0064 0.82 10.9 0.9 1 23 475 498 475 498 0.98

5 14 0.017 2.2 9.5 1.4 1 21 509 529 509 530 0.93

6 14 0.043 5.6 8.2 2.7 2 23 548 569 548 570 0.93

7 14 0.045 5.8 8.2 0.2 1 21 575 595 575 596 0.95

8 14 0.0051 0.65 11.2 6.6 1 23 625 648 625 648 0.89

9 14 0.39 51 5.2 6.1 1 23 685 708 685 708 0.94

10 14 0.0043 0.56 11.4 1.2 2 23 718 739 717 739 0.95

11 14 3.7 4.8e+02 2.2 0.4 1 23 744 769 744 769 0.88

12 14 0.005 0.65 11.2 1.2 1 23 775 797 775 797 0.95

13 14 0.00012 0.016 16.3 7.1 1 23 803 825 803 825 0.98

14 14 0.00027 0.034 15.2 7.0 1 22 831 852 831 856 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.33	42	5.5	0.9	1	23	183	207	183	207	0.90
2	14	0.12	15	6.9	4.1	1	20	362	381	362	386	0.90
3	14	0.023	2.9	9.1	0.7	2	23	443	465	442	465	0.96
4	14	0.0064	0.82	10.9	0.9	1	23	475	498	475	498	0.98
5	14	0.017	2.2	9.5	1.4	1	21	509	529	509	530	0.93
6	14	0.043	5.6	8.2	2.7	2	23	548	569	548	570	0.93
7	14	0.045	5.8	8.2	0.2	1	21	575	595	575	596	0.95
8	14	0.0051	0.65	11.2	6.6	1	23	625	648	625	648	0.89
9	14	0.39	51	5.2	6.1	1	23	685	708	685	708	0.94
10	14	0.0043	0.56	11.4	1.2	2	23	718	739	717	739	0.95
11	14	3.7	4.8e+02	2.2	0.4	1	23	744	769	744	769	0.88
12	14	0.005	0.65	11.2	1.2	1	23	775	797	775	797	0.95
13	14	0.00012	0.016	16.3	7.1	1	23	803	825	803	825	0.98
14	14	0.00027	0.034	15.2	7.0	1	22	831	852	831	856	0.94

Sequence Information

Coding Sequence: ATGGACCCTTCTTCGTTTGACGAAGATACTCACATTTGTCTCAAGTGCAACAGTACTATCGTGGGTCTCGATAACTATGTATTACATCGGCGCACCAAGTGCAGCGTGGCGCCTCTACAGATTGACACAACTTCCATCCGATTTAATGACCCGAAGCTGCGATCATCCCCTGAAAACTCGCCATCCAAGGCTCAAGATTTCTTCAGTTCCCTCGAGCTCCGTAGCAGTTCTAAGGACCGTTTGAATGAATTTGAAATTGATTTTGATTTACCTCCTATTCATCACAAATCTGAATTAGACTTACCTTCAAGCTCGTCAAAAAACAATTACGTTCGGTTATCCGAACTTGAATTGGAGTCGAATTTTGTTGAGCACATCGAGATTGATTTAAGCTACTCTGATATATTCTCATCTGGCACCATCGACAATGTAATGACGTCGCCGCTTGTCTCTTCCATACGTGATTTTGCTCCTCCACCAACACACACATCAGGAAAGTGGATGCCCGGTAAATCTGGTCACCGCAAGTACGGAAGCGACGTCCACTACTTTTGTCGCACTTGCAATCGTCGGCTGGCCAGCAGCTTGTTATATGAAAACCACTTAAAGTCCGAGCTTCATTTCAAACGAAAAGCAGAGAGTTCAGTTCTCGACATGGAAGGCCTTGGCTCTGTGAACTTGGCTAATAGACCTTCCTACAAGGTAGATCGCCCTCGTCGCTCTGGGGCCGGCAAGAAAAAGGGATATGACGACATGCTCACGCCAAGCCAGGTCAAGAAGTTGAGAGCCTCCAAAAAGAAAGGCTCCAATGTCTTGGTCCTGCCAAGGACTACCAGTCCTGCGACTGCCAGTCGTACTAGCAGTGCTGCTGGTAGTAGCGGTGGTGAAAGCAGTGGCAGCGGTGCTGGCAAGAGAATGTGTCGGAAGTTTGTGGACTGCGACGTTTGTTCGATGAGAGTCCACAAAACCTTGGTGGGGAAGCATCTCGTGTCTCACTTTCACTGTATCCGTGCGGGGCACCACCCTGAACTGGCCAAGAAAATGGTGCTTCGTCACATGGACCGCATTGTACATCACGCCCCCTTCCAGTGTTCAATGTGCCACTTCTACTGCAACTCTCCGTCAGCCCTGAAGATGCACTTCACCTCGGATATGCACCAGCAAAATGACAAGCTGCACCATGGACTATATTGGTGTCAACAATGTAAGGTGGAGTGTCCAGACTTGGCCGGTATCGTTGAGCACCTTAGCTCCGAGACTCACCTGCAAGTGGCGGCGGCTCTGAACCATACCGTGCCCATGGTGGTGCGAAAGCGAGAACTACTGACCTGCAGCGAGTGCGACGTCAAGCTACCCCTCAAGATGGCTCTAGTTCAGCATATGAGGCGTTGCCATAGACTGAATCCTGACCCCGAGCCGTTCTTTCAATGTGCACTGTGCTCCTTCGCCAGCGCTAAGCGACGGTCTCTccagACTCACATGCTGACCAAGCACGTGAAGAAGGCCGGCTCACGTCGTCGCGACTACTTCTGCGGGATCTGTGACCGTACCTTCGAGACTCGAGCGCAGTGCACGGAGCACCGCCGTCTGTTGGTGTGCAAACTTCGCAGTGCGCGTCTCCGAGGTCGTGATGTCCGCCGCCGCTGTAACCTGTGTGGAGAGCGATGCGAGGACCTGGCAAAACTTAAGGAGCACCTCTTTGAGCATCACCAGGGCGCCCTACACAGGTGCGAGACTTGTTACGAGGAATTCGCCATCTCCCAGGACTTGTCGCGACATGTACGCGACGGCAAGTGCAATGGCAATCTGGACTTTGTAGCTCAAGTGCCAAGTCCCGACGTGATCGTGCTGCCGGCGCCTGAGAAAAAGAGATTCTCCTGTGATCACTGCGTCAAATCGTTCACCAGAAAGAGGAACTTGGCCTACCACTGCATGAGGTTTCACGCTGTAGCCGAAGAAGTGGATTCAGAGCTAGTTCTGGTGGACGGTGTTGAGGCAACTCCCAGGGTGATCGAGGCTACAGCCATACCCGCCCGCCGACAGTACCCGATCTTTAGGTGTGACCTGTGTAAATTCTGCACAGCGAAGAAGTGTTTCCTGCAGCGCCACATTAGCGCCATGCACTTCCCAGACACGCGTTCTCGGGACTGGACCTGCGTCACTTGTCTCAAGTCGTTTTACGAAAAATACAGCCTGAGGCAGCACGAAAAGCTGCACTTCCCAAAACCGTTCAAGTGCCTTGAGGTGGGTTGCATCTTCTCGTCGCGATACCAGAGTGAGATGACTCGCCACACCGACAGCGTTCACTCCGAAGAGCGACACTTTGCTTGTCCTAAATGCAGCTACGAGGCAAAGACCAAGTTTCAGCTCAAGAGACATTCCACGGTGCACGAGGATGAAAAGGCATACCAGTGCCAGCATTGTAAGATGCGCTTTAGCCTCAACTCGCACCTCCGTCGCCACAACCGTGTGCACACCGGGACCAAGCCATTCAAGTGTCCACACTGTGACTACTGCTGCAACACTCTGGAGAACCTACGCAAACATATCCTGAAGACCAACAAACACCTCAACAAGGACATGTACCGCTGTAAATTGTGTGCCAAGGCACAGCCACCTGATGATCCCACCCCTGTCTTTTCGTGTAACCACGCCAATGACTTCAGGGCTCACCTCCACCTGGCTCACCAGGGTGAGGTACAGACCCTAAACTTGGGTACcagaaatattttgaattacgTGGACGGGATCTGTGATGATTTCGTGTCATTGGCTAGTCTCGAAAACTACAAGACCCGCACCACACCTCTACCTTGTGCTGCTCCCCCAAAGACAAGCGGCAAGCAGGGTGGCAAAAGGTTGGTGGAGAAGGTACCCCTTGGGAACAGTGTCCCCCCACCACTAGGTCGCCCAGTGACGCCAAGCTGTGCAATCCAATTAGACGAGCAAATTCACCACGTTGAGGCAGCGGAATCGCTCCTTAAATTGCAATATTCGTTTTAA
Protein Sequence: MDPSSFDEDTHICLKCNSTIVGLDNYVLHRRTKCSVAPLQIDTTSIRFNDPKLRSSPENSPSKAQDFFSSLELRSSSKDRLNEFEIDFDLPPIHHKSELDLPSSSSKNNYVRLSELELESNFVEHIEIDLSYSDIFSSGTIDNVMTSPLVSSIRDFAPPPTHTSGKWMPGKSGHRKYGSDVHYFCRTCNRRLASSLLYENHLKSELHFKRKAESSVLDMEGLGSVNLANRPSYKVDRPRRSGAGKKKGYDDMLTPSQVKKLRASKKKGSNVLVLPRTTSPATASRTSSAAGSSGGESSGSGAGKRMCRKFVDCDVCSMRVHKTLVGKHLVSHFHCIRAGHHPELAKKMVLRHMDRIVHHAPFQCSMCHFYCNSPSALKMHFTSDMHQQNDKLHHGLYWCQQCKVECPDLAGIVEHLSSETHLQVAAALNHTVPMVVRKRELLTCSECDVKLPLKMALVQHMRRCHRLNPDPEPFFQCALCSFASAKRRSLQTHMLTKHVKKAGSRRRDYFCGICDRTFETRAQCTEHRRLLVCKLRSARLRGRDVRRRCNLCGERCEDLAKLKEHLFEHHQGALHRCETCYEEFAISQDLSRHVRDGKCNGNLDFVAQVPSPDVIVLPAPEKKRFSCDHCVKSFTRKRNLAYHCMRFHAVAEEVDSELVLVDGVEATPRVIEATAIPARRQYPIFRCDLCKFCTAKKCFLQRHISAMHFPDTRSRDWTCVTCLKSFYEKYSLRQHEKLHFPKPFKCLEVGCIFSSRYQSEMTRHTDSVHSEERHFACPKCSYEAKTKFQLKRHSTVHEDEKAYQCQHCKMRFSLNSHLRRHNRVHTGTKPFKCPHCDYCCNTLENLRKHILKTNKHLNKDMYRCKLCAKAQPPDDPTPVFSCNHANDFRAHLHLAHQGEVQTLNLGTRNILNYVDGICDDFVSLASLENYKTRTTPLPCAAPPKTSGKQGGKRLVEKVPLGNSVPPPLGRPVTPSCAIQLDEQIHHVEAAESLLKLQYSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -