Basic Information

Insect: Siphlonurus alternatus
Gene Symbol: -
Assembly: GCA_949825025.1
Location: OX463781.1:12247545-12256347[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.15 19 6.6 0.2 6 23 2 20 1 20 0.92

2 14 0.00038 0.049 14.7 1.8 1 23 39 62 39 62 0.91

3 14 4.8e-05 0.0062 17.5 2.4 1 23 84 107 84 107 0.94

4 14 0.00054 0.069 14.2 1.2 1 23 149 172 149 172 0.92

5 14 0.00012 0.016 16.3 0.6 1 23 217 240 217 240 0.96

6 14 9.3 1.2e+03 0.9 0.8 1 7 247 253 247 255 0.93

7 14 1.9 2.4e+02 3.1 5.0 1 23 269 292 269 292 0.93

8 14 0.00018 0.023 15.7 0.7 1 23 325 348 325 348 0.97

9 14 3.8e-05 0.005 17.9 1.4 1 23 376 399 376 399 0.97

10 14 5e-06 0.00064 20.6 3.0 1 23 417 440 417 440 0.97

11 14 1.7 2.2e+02 3.3 0.5 1 14 447 460 447 463 0.84

12 14 2.1e-05 0.0027 18.7 1.3 1 23 490 513 490 513 0.95

13 14 0.00027 0.035 15.2 0.6 1 23 538 561 538 561 0.95

14 14 0.0071 0.92 10.7 6.2 1 23 568 591 568 591 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.15	19	6.6	0.2	6	23	2	20	1	20	0.92
2	14	0.00038	0.049	14.7	1.8	1	23	39	62	39	62	0.91
3	14	4.8e-05	0.0062	17.5	2.4	1	23	84	107	84	107	0.94
4	14	0.00054	0.069	14.2	1.2	1	23	149	172	149	172	0.92
5	14	0.00012	0.016	16.3	0.6	1	23	217	240	217	240	0.96
6	14	9.3	1.2e+03	0.9	0.8	1	7	247	253	247	255	0.93
7	14	1.9	2.4e+02	3.1	5.0	1	23	269	292	269	292	0.93
8	14	0.00018	0.023	15.7	0.7	1	23	325	348	325	348	0.97
9	14	3.8e-05	0.005	17.9	1.4	1	23	376	399	376	399	0.97
10	14	5e-06	0.00064	20.6	3.0	1	23	417	440	417	440	0.97
11	14	1.7	2.2e+02	3.3	0.5	1	14	447	460	447	463	0.84
12	14	2.1e-05	0.0027	18.7	1.3	1	23	490	513	490	513	0.95
13	14	0.00027	0.035	15.2	0.6	1	23	538	561	538	561	0.95
14	14	0.0071	0.92	10.7	6.2	1	23	568	591	568	591	0.94

Sequence Information

Coding Sequence: ATGTGCGAAAAGTCGTACAAGAAAGCCAACACTTTGCTGCAGCACACCATTAACATTCACGGCAAAGACAGCGCACCTTTGTCATGGTGGGCGTTGCGGCCCTTCCTCCCACGCTTCGAGTGCCTCTTGTGCGACAAATCGTACAAGAGGAAGGGTGACCTCGTGGTCCATTGCAGAAACCTGCACGGAGAAGACCAGGGCTCTCACCGTCTTGAAGCCATGTATATGGGTCGCGTGGTGAGCCGTCGCTTCAAGTGCACGCTCTGCGACAAGGAGTACTCGTCGCAGGGCTCTCTGCGCACGCATCACGACAACCTGCATGGCAGGAACGCGGGGCCGTTCGTGCCAGCTACTGCTGCTGCGGCGGCGAGGCTGCCGGATTCTGGCTATACGTGGCCGCAGTCCCAGTCTAACCACATGGTTAAGAATGTGCAGGAGCGCCCGTTTCAGTGCTCGCTCTGCGAGAAAAAGTATAAGACAAAAGTGGCACTCCTGCAGCACTTCGAGTACATTCACGCAGGCATCAACCAGCAAGTCAGCAATCTGAGATTTTACGCCATCAGCAGGCTTCTGCGAGAGCTGAGCGgTTACGAGTCGCACTGGATTGATAAAACGCCCGCATTCGAATCTCAAGCAGAAGAGAACAATTATGAATGTCATATTTGCGGACGTTACTTTAACGGACCTACCAGGCTAATGACTCATCTCAAAGGAGCTCACTCTTCGTGTCGGCGCACTTATAAGTGCAAATTCTGCGGCCCTGCTGCTCCTGCGAGTAGGAGGGTGCCCGGCGCGGGAGGACGTTTCCAGTGCGACCAGTGCTGCAAATCATACTCGATGCACCGTGGACTAGAAATACACAAGACGAACACGCATGGCAGTTTTGCTACCCCCACACAGTGCCCCATATGTTACAGCTTCACGCCTGCATTCGTTGATCTGATGGGGGCTGATCGTGTTCGGCAGAGAGTTTACTCGTGCCCAGTGTGTTCGCGCTCGTACCTTAGAAAGGACAATTTGGGACAACACATGAAGAATTCGCACGGCTCAGATGCACGGCCCTTCGTATGCCAGCTGTgcttCGAGATTGTCGGCGAGCGTGTTGCTGCCGCCACTCTGAAGTCGTTTCAGTGTCGCTTGTGCTTGCGCTCATACGTCAATCAAAACAACCTGACGCAGCACATCCGCAACTCTCATGgATACATACACATCAGACGCCGCTCTCGTCTTGCGGAGACGTCCAAGACTTACACGTGCCATTTGTGCGAACGCTCGTACGTAAGGCGAGACAATCTGAGCCAGCACATCCGCAACTTCCACGGCGAGGACGCGCGACCGTTCTTCTGCGCTATGTGCCCAAAAATATGTAGGAACAGAAACGCAATGCGATGTTACGTTTGGTCCGGCTGGCGGTTTATCTCCGAGGCACAACAAGAGTTCGAGGGTCCCCCCGACATGACGCCACGTTACCCGTGCAAACACTGCGACAAGACGTACTCACTGCCTCGCAACCTGCAACTGCATGAGCAGAACGTGCATGGAGATGATGCAAGGCCGTTTATTTGCGTGTTCGCCTCCTCTCTCGGTGTGCCGGAGAGCGGCAGTGTGCGGTTTAGTTGCGAGGTGTGTGGCGCCTCGTATACTCTCTGGCGAAATCTGCAGCTGcactttaaaaattttcatggtgCAGATGCCAGACCCTTCGCCTGCCAATATTGTCAGCACGTTTGTAAAAACCGACAGTCCCTGCGCAATCACATCAACTTCAAGCACAGGGATATCAAGCGAGCTAACAGGCTGCGACAAGCCCACCAAGTCTTGTAA
Protein Sequence: MCEKSYKKANTLLQHTINIHGKDSAPLSWWALRPFLPRFECLLCDKSYKRKGDLVVHCRNLHGEDQGSHRLEAMYMGRVVSRRFKCTLCDKEYSSQGSLRTHHDNLHGRNAGPFVPATAAAAARLPDSGYTWPQSQSNHMVKNVQERPFQCSLCEKKYKTKVALLQHFEYIHAGINQQVSNLRFYAISRLLRELSGYESHWIDKTPAFESQAEENNYECHICGRYFNGPTRLMTHLKGAHSSCRRTYKCKFCGPAAPASRRVPGAGGRFQCDQCCKSYSMHRGLEIHKTNTHGSFATPTQCPICYSFTPAFVDLMGADRVRQRVYSCPVCSRSYLRKDNLGQHMKNSHGSDARPFVCQLCFEIVGERVAAATLKSFQCRLCLRSYVNQNNLTQHIRNSHGYIHIRRRSRLAETSKTYTCHLCERSYVRRDNLSQHIRNFHGEDARPFFCAMCPKICRNRNAMRCYVWSGWRFISEAQQEFEGPPDMTPRYPCKHCDKTYSLPRNLQLHEQNVHGDDARPFICVFASSLGVPESGSVRFSCEVCGASYTLWRNLQLHFKNFHGADARPFACQYCQHVCKNRQSLRNHINFKHRDIKRANRLRQAHQVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -