Salt011917.1
Basic Information
- Insect
- Siphlonurus alternatus
- Gene Symbol
- -
- Assembly
- GCA_949825025.1
- Location
- OX463781.1:12188573-12202864[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.9e-06 0.00063 20.7 0.9 1 23 25 48 25 48 0.97 2 19 0.0086 1.1 10.5 0.6 3 23 57 78 55 78 0.95 3 19 1.1e-05 0.0015 19.5 0.5 1 23 186 209 186 209 0.96 4 19 0.0004 0.052 14.6 1.8 1 23 216 239 216 239 0.94 5 19 0.63 81 4.6 6.7 1 23 252 274 252 275 0.93 6 19 0.029 3.8 8.8 0.1 3 20 302 319 301 321 0.94 7 19 0.00068 0.088 13.9 8.0 1 23 396 418 396 419 0.95 8 19 8.8 1.1e+03 1.0 0.5 1 16 426 441 426 442 0.78 9 19 0.00077 0.099 13.8 2.0 1 23 459 482 459 482 0.90 10 19 0.022 2.8 9.2 0.2 1 17 489 505 489 506 0.94 11 19 0.00025 0.033 15.3 1.2 2 23 517 539 516 539 0.95 12 19 0.0012 0.16 13.1 1.6 3 23 547 568 545 568 0.90 13 19 0.25 33 5.8 2.4 1 23 598 621 598 621 0.93 14 19 0.017 2.1 9.6 2.3 2 23 663 685 662 685 0.93 15 19 0.0083 1.1 10.5 2.8 1 23 692 715 692 715 0.96 16 19 9.9e-05 0.013 16.6 3.6 1 23 743 766 743 766 0.93 17 19 0.00059 0.076 14.1 2.4 1 23 773 796 773 796 0.97 18 19 0.0073 0.94 10.7 1.7 2 23 808 830 807 830 0.92 19 19 4.4 5.7e+02 1.9 1.2 1 23 837 860 837 860 0.91
Sequence Information
- Coding Sequence
- ATGGGCTTTAAAAGAAGTAACGCCGGGCCTGCTCCTCAGAGGTTTGGCCCGGCAGAGGGCTTCGGCCATCTGTTCCGGTGCGAGGAGTGCGGGCTCTCGTACACAGCCAAACGCAGCCTCAAGCGGCACCAGCGAAACGCACACGGCGATCTCCTGGGTCCTTGGGCATGCGGTCTCTGCAACCGCGAGTTCAAGAACAAGATGGTGCTTGACAAGCACACCAACAAGTACCACGGTCACGTGCCTGGTCAAGGGACCACCACCAATCAACCTCGAGGCATTGGTGTGGCCAAGTTTATCGCGTGGTACCAGGTCTACAGCAGTGCGCGCCAGCTCGAGTGGGCGTGGCCGCGGTCGTCCCTCAGGCAAGCAGTCTGTGCTCAAGTGTCCTATGTGCTCGCTCACGTTTCGGAGGCAGCAGCATCTGCGACGTCACGAGAGGAACGCGCACGGCGAGGACGCGGGACCGTTCCCTTGTACCTTCTGCCTGCAAATCACACCAGCACCTCACATCAGCCCTCGTCCAGTAGCAGCAGGGTCTGTGACAACAAAGGTTTCAGTTGTGCGCGCTGCGACAAGTCGTATGCTCGTAAAGGCGATCTTCTACGTCACGTCCGTAACTTGCACGGCGAGCTGGCACGTCCCTTCAACTGCAGTCTGTGTACACGTGTATATAAGAACAAGAGTGCGCTTCAGTACCACGTGTACCGTACACACAGAGCATACCGTGGGCAGCATGGTGCCGCAGTGGGTCACGCGTGCACCCTTTGCAAGCGGGTGATGGGCAGCCGGCGCTCGCTGATGCGCCACCACCGCAATCACCACGGTAGCCACGCGGGAGCTTTCTTTTGCGGCCAGTGCGGGGCAGTCAAACACAACCTCAACAGTCTGCGGTGGGTGGCGTGCCCCGTGTGCCTGAGGACGCTGAGCACCAAGGCAGACCTCAAGTACCACCGAGAGAACAAGCTGAGCGGCACCATCTCATGTCCCGTATGTGGTATCTTCAATAAGAACTACAACAGTCTGCGCTGCCACACGTGTACGGAACACACACCAGGAAGAAGCCGCGACACAAGTGGACCAAAGTCTCGGGGCAGCAGTCAGCACTACTTGACCTCTGATGACCTTGCCCCGCCCCCTTCTACGCAGGACCCTCGCAAGATACTACCGAACGCTCGCAATCGTTATCCTTGCCCAATTTGCAGCAAGGAGTTCAGTCGTCACCACCACCTCAACTATCACTACGATAACCACCATGGCAAGGAGTGCGGCTCTTTCTCGTGTGTCTACTGCGGCGTTACCAAGAAGAACAAAAACTCACTGCGATGTAATCCCCGCCGTGGTCGCGATCGCAGCCACCGTCGCGGCTCCGTGTTCCCGTGCCCAGTGTGCAACAAGCTGTTCACTCGCAGGGACAACCTCAACTGCCACTACGAAAACCTACACGGCGCTGCACGAGGACCGTTCTCGTGCTCGCTTTGTGGCAAAATAACCAAGAACTTGAGCAGCCTTCGTGTGAGTAGCGGGTTGGTGGTGCCTGGTGGCAAGCAGTGTCCCGTGTGCGGCGTCCTGTTCGGCTTCAAGTACAACCTGCACCGCCACATCCGAGACAAGCACGGCCGCCAGGCGCCCCTCTTCTGTGATACCTGTGGCAAACCGTGCAAGAACCGCAGCACTCTCGCCTCGCACGTCTACCTTTACCACTCGGTCAATGCACCGCGAGCATACTCACGACATAGAGATAATGTGGCGCGGCTGGTGGGACGGTCCCCGATGATGGTAGACGGCCGGTACAAATGCCTGCTGTGCAAGGGTCTGTACTGCAGCAAGGACTACCTCAAGGTGCATTTGGTGAACCAACACGGCTCCGGCAACCGGCCGCACAAGTGTGTCCTCTGCGGCAAGCTCTCGCGCAGCCTCGAGGGAATACGATATGTGTCACTGCTGCTGAGTGCTGCGCCCCGCGACCCCTCCACGCGGCGTCTCAAGTGCGTGCTGTGTCACGGCGAGTACAGCACGCGCTACCACCTGCGTGTACACCTCATCAACCAGCACGGAGACGGCGGCCGGCCGCACGAGTGCCTTCTTTGTGGCAAGGTATCGCGATCCCAGGAGGGGCTTCGCTGTCACATGAAGCGCGAACACAAACAGGAGTACCCTTCTGCACCTTTTGAGGGGGAGGTGACTGCCATGGTGCAGTGGGCTGGTTTAGTTAGCCGCGGTGACTTCGAGTGCCAAGTATGCCAGCGCCACTTCAAGCAACGCGACCATCTTCGCGTGCACCTGGTGAACCTGCATGGCAGCGGCAGGAAGCCACACCGCTGTCACGTATGCGGGATCTTTTCGAGGAGCCGCGAGGGTCTACGCGTGCACATGATCAGATACCATAAGGGTACCCCCAAGCCGAAGACCCAGAGTCTCGAGTGTGCCACATGCAGTCGGCGCTACAAAACACGACACTCGTTGCGTGAGCACGAGCTCAACATCCACGGCAAGCTGTGCGGACCCTTCGAGTGCTTCGTGTGCCAGGCGCTGTCCACCAACGTGCGCTCGCTCAGGACACACTTCTACAGCTACCACCCTGAGCAACTGGCTGAGCTCAAGCGCAGACTTAAGTTCAAACAGTTCTAG
- Protein Sequence
- MGFKRSNAGPAPQRFGPAEGFGHLFRCEECGLSYTAKRSLKRHQRNAHGDLLGPWACGLCNREFKNKMVLDKHTNKYHGHVPGQGTTTNQPRGIGVAKFIAWYQVYSSARQLEWAWPRSSLRQAVCAQVSYVLAHVSEAAASATSREERARRGRGTVPLYLLPANHTSTSHQPSSSSSRVCDNKGFSCARCDKSYARKGDLLRHVRNLHGELARPFNCSLCTRVYKNKSALQYHVYRTHRAYRGQHGAAVGHACTLCKRVMGSRRSLMRHHRNHHGSHAGAFFCGQCGAVKHNLNSLRWVACPVCLRTLSTKADLKYHRENKLSGTISCPVCGIFNKNYNSLRCHTCTEHTPGRSRDTSGPKSRGSSQHYLTSDDLAPPPSTQDPRKILPNARNRYPCPICSKEFSRHHHLNYHYDNHHGKECGSFSCVYCGVTKKNKNSLRCNPRRGRDRSHRRGSVFPCPVCNKLFTRRDNLNCHYENLHGAARGPFSCSLCGKITKNLSSLRVSSGLVVPGGKQCPVCGVLFGFKYNLHRHIRDKHGRQAPLFCDTCGKPCKNRSTLASHVYLYHSVNAPRAYSRHRDNVARLVGRSPMMVDGRYKCLLCKGLYCSKDYLKVHLVNQHGSGNRPHKCVLCGKLSRSLEGIRYVSLLLSAAPRDPSTRRLKCVLCHGEYSTRYHLRVHLINQHGDGGRPHECLLCGKVSRSQEGLRCHMKREHKQEYPSAPFEGEVTAMVQWAGLVSRGDFECQVCQRHFKQRDHLRVHLVNLHGSGRKPHRCHVCGIFSRSREGLRVHMIRYHKGTPKPKTQSLECATCSRRYKTRHSLREHELNIHGKLCGPFECFVCQALSTNVRSLRTHFYSYHPEQLAELKRRLKFKQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -