Basic Information

Insect: Siphlonurus alternatus
Gene Symbol: RREB1
Assembly: GCA_949825025.1
Location: OX463782.1:6042281-6049860[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0002 0.026 15.6 0.2 1 23 124 146 124 146 0.98

2 17 2.4e-06 0.00031 21.6 0.3 1 23 172 194 172 194 0.98

3 17 7.6e-06 0.00098 20.1 2.9 1 23 200 222 200 222 0.99

4 17 0.05 6.5 8.0 0.6 2 23 288 310 287 310 0.90

5 17 0.02 2.6 9.3 0.4 1 23 368 391 368 391 0.88

6 17 0.06 7.7 7.8 0.1 1 23 515 537 515 537 0.97

7 17 0.00078 0.1 13.7 0.9 1 23 544 566 544 566 0.99

8 17 0.012 1.5 10.0 5.7 1 23 572 595 572 595 0.97

9 17 0.058 7.5 7.9 0.3 1 23 621 644 621 644 0.93

10 17 0.002 0.25 12.5 2.0 1 23 906 929 906 929 0.95

11 17 5.7e-05 0.0073 17.3 1.3 2 23 1125 1146 1124 1146 0.97

12 17 0.15 19 6.6 5.4 1 23 1152 1175 1152 1175 0.96

13 17 0.019 2.4 9.4 1.7 1 23 1214 1238 1214 1238 0.95

14 17 0.0019 0.24 12.5 0.6 2 23 1303 1324 1302 1324 0.96

15 17 0.17 22 6.4 1.0 1 23 1329 1352 1329 1352 0.96

16 17 0.012 1.6 10.0 0.5 3 23 1410 1430 1408 1430 0.93

17 17 0.002 0.26 12.5 5.0 1 23 1436 1458 1436 1458 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0002	0.026	15.6	0.2	1	23	124	146	124	146	0.98
2	17	2.4e-06	0.00031	21.6	0.3	1	23	172	194	172	194	0.98
3	17	7.6e-06	0.00098	20.1	2.9	1	23	200	222	200	222	0.99
4	17	0.05	6.5	8.0	0.6	2	23	288	310	287	310	0.90
5	17	0.02	2.6	9.3	0.4	1	23	368	391	368	391	0.88
6	17	0.06	7.7	7.8	0.1	1	23	515	537	515	537	0.97
7	17	0.00078	0.1	13.7	0.9	1	23	544	566	544	566	0.99
8	17	0.012	1.5	10.0	5.7	1	23	572	595	572	595	0.97
9	17	0.058	7.5	7.9	0.3	1	23	621	644	621	644	0.93
10	17	0.002	0.25	12.5	2.0	1	23	906	929	906	929	0.95
11	17	5.7e-05	0.0073	17.3	1.3	2	23	1125	1146	1124	1146	0.97
12	17	0.15	19	6.6	5.4	1	23	1152	1175	1152	1175	0.96
13	17	0.019	2.4	9.4	1.7	1	23	1214	1238	1214	1238	0.95
14	17	0.0019	0.24	12.5	0.6	2	23	1303	1324	1302	1324	0.96
15	17	0.17	22	6.4	1.0	1	23	1329	1352	1329	1352	0.96
16	17	0.012	1.6	10.0	0.5	3	23	1410	1430	1408	1430	0.93
17	17	0.002	0.26	12.5	5.0	1	23	1436	1458	1436	1458	0.98

Sequence Information

Coding Sequence: ATGATTGAAATATCGAGTAGTTTTGGGGACAATGGACATCAAGTGGCGACGTCAACGGACTCTGAGATAGATTCGTCCGTGGAGTCTCACAGCAGTCCGGTGGAGACGAGCCCCGCCAGTACGGAAGAAGCTCCAGTAGTGACAAGTCCTGCCTCGTCGCCCGTGCCCACGTCTGAGGAAAACCTGGCCGCAGGTTCCGGTGTGGGGGCGACCGACGAGCCGGCCAACCTCACTGGGGCGCGCAAGAGGAAAGCGCATCGCGTCGTCAAGAGAGAAACTTCAAGCGAGGGCGGTCAAAGCGGCGTGGAAGCTACAGAAGGACGTAGCAGTTCGAGCGAGGAGACGACTTGCACTGAGGACGGGGTTAAGTACGTGTGTCCCGTGTGTGAGAGTGTGTTTGGCTCGCAGCACGAGTTCACGGTGCACATCCGGGCACACAACGAGGGTTCCGTGGCCGGAGCGAGCGGGGCAACCACGCCCCCCGccaacaacaataacaacaacaataagGTGTTCAGCTGCAGCATTTGCGGCAAGATGTTGAGTTCATCGAGCTCGCTGGATCGTCACATGTTGGTGCACTCTGGAGAACGTCCCTTCAAGTGTCGCATTTGCAGCGTGGCCTTCACCACCAATGGTAACATGCACCGTCACATGCGCACGCACAACAACAATACGAGCAGTGTCAACAACAACCACCAGCAGTCTCTGGACAGTGATGGTGCCAGCTCGGACAGTGCTCCGGACAAAACAAGTAGTCGGAAACGACGCTCAAACGGTGACCTAAGCGTACCTTCGCCAAAGAAACGTAGCGAGGAAGGTAGCTGTGTGTCACCTCCCTTGCCGTGTCCATCGTGCCAGAGATGTGACAAGTGCTACATGACGTTCAACTCTGAAAGGGAGCTCAGTTTACACAGGTACGCCGCCCACGCCCCGCATGATGATGAACCGATCGTGGAAGAGCCAAAACAGTCATCAGCTCCACCACACGTTGGTTTCAAGGATCTCAATTTTGTTGATTTCTCAACTGATAAATTCCCACTTATTGCTCGGGCATTTTGCGAGCGTTCAGTCCATAAGGCAAGCTCTATTTTCCATCGGTTTCAATGTGAGGACTGTGGGCGTGCGTTTCCCTGCGGTAGTGCGTTACACATCCACGTAGCTTCTGCTCACAGCGAGACGAGCCCACGTGATCTGAGCTGCCCTCGACGTAAGTTGCACTACGAAGAGCAGAAAGAGGACTTCTTTGCAGGTCTCGACCTGCAGACCAAGAGTCCCGCCCCTTCACCACCCCCGGCAGCCACCCCCTCCCCTATCAAGGTTCGGGCTCTCAGCGAGCTAGCCACCCCCCGGCGAGAGGAGGAACAGTTTGAGAACGCTCATTACTTCAACAATGAGGTTCGGTCTGAAGAGCAGGGAGCTCGAGACCTTGCAGACATCCCCAGCATCCTCTCCGTGGCAAACCGAGGGGCCTTGGACCTTGCCAAGTCACCTAACTCCTCTTCAGATGAGGGTCTCAGGCAGATGAAACTGCGAGGGGAGTTCCCTTGCCGTCTGTGCACCGCCATCTTCCCGAACCTGCGTGCCCTGAAGGGTCACAACAGGGTTCACCTGAGTGCTGGACCCCCGTACTATTGCAACATGTGTGTCTATAACAGCAACGACAAAGCCACATTGGTCCGACATCTGCGGACTCACAATGGAGAACGTCCGTTCGAGTGCCGCTTGTGTCACTACGCCTTCACGACCAAGGCAAACTGCGAGCGTCACTTGAGAAACCGTCACAACAAGACGTCTCGCGATGACGTGCGACGCTCCATCGTCTGTCATCTGGGCGAGGAGACGTCTCCAGAGCGGCCGCACGAGTGCTCGGCGTGCGACAGAACCTTCCCCTCACGTACCGCAGCCATGAGTCACGTGGCCCGCGATCACCCCACCCTTTTGGCCTCTGACTTGGTACGTCTAGGGGCCGACCCTGAGGAAATTGAAGATGAAGAACAGCTTATGATGTCTCCTGGTAGTTCTCCAAGACCTCGTGATCGATCCTCGAGTCGTTGCAGCAGTGAAGACGAGCAACCTCGTGATGCTCCCTCCCCCCTTGATCTCAGCATGGACGCGCTGGACCTCAGTAAGAAACCAACGCCCATAGTCACAGCTCCCGCTCCCGTTCCTCCAGTAGTTGTCAACAACACCCCTCCACAAGAGGCTCCTCAGGATCTCACAAAACCCAGAGAGGTGCACCAACCCCCTATCATACCACCTCATCACATTCCACATATCCCCCATCCTTTCTTGTCTCACCATCACCCAGGATTACCAACCCCCCCGCCTCCGAGTGCATTCTTCCCCAATCCTCTGAGTATGTACCTCGGTTCTCCGTTCCAACGACCACCATTCCCGTTCTACATGCCAGGCTTGTTTGGCAGCAGCCCCTCCCCTGCAGCCACCccacctcccccaccccctgcTGCCCCCGCCTCTTCCTTGGATGAGGTGAAAGAGCAGCTACAGAAGGAATTGATCCGCGGGTTACAGCTCACTTCAGGTGGTTCGCTCGTCATGGACGCTCTCAGGAAACAGCCGGAGCCTCCCCGCAGTCCCCCACCCCCACAACCCACCCCTGATGTCCGCCCTGACCCCCCAGTCAAGATGGTGATCAAGAACGGTGTGCTGATGCCCAAGCAGAAACAGCGGCGTTATCGCACCGAGCGTCCGTTCGCATGTGAGCACTGCTCTGCTCGCTTCACGCTCAGGTCCAACATGGAGCGACATGTAAAGCAACAGCATCCTCAGTTCTGGAGTCAGCGACCCCGTGGAGGGCGCAGGGCGGCGGCTCCTGGGGGCTCGAGATCAACCCGTGACCCCTCGCCTCTGCCCATGCCACAGCCAGAGATCACCCTGCTTGGAGAACCTCGCATCTCAGAAGagGTGAAACACGCACTGGCCCAGCAGCTGAAGCAGAAGTTGGGGGGCGAGGACTCAGCCCGTCGTCTGGCCGAACAGGCTGCCGAGGAAACGGCTGCCGAGGGCGATGGTGAAGACGAGGAAGACGAGCCTGAGTTGGTGATTGATGAGGCGCCGCTCGTGCCACGTCGCTCCCCACGAGACACGGACGCCGACTTGGCGAGCGTGTCTCGTCTGCTAGTGAACGCCTCTGCACAGAGCTTTCAGCAGTTCTTCCCAGGACAGGAGGAGGACGAAGAAGAGGAGGAAGGGTTCATGGAGGGTGACGACGAGGACGAGGGCATGCTGGACTGTGAGGACGGTAGTAGCAGCGAGGGAGGTCCGCTCACGAGCGGTGACGAGGGACGAGCTTCACGCTCAGACGCTCCAAAAAAGAAAAGCGCATACTCGAGCGCTCCAAACCGCGTCTCATGTCCTTACTGTCACCGCAAATTCCCCTGGTCCAGCTCCCTGAGGCGTCACATCCTCACACATACCGGACAGAAACCGTTCAAGTGTGCCCACTGTCCTCTGCTGTTCACCACTAAGTCCAACTGTGACCGTCACCTTCTAAGAAAACATTCCAAAAAGAACTCCTCACCCCCTTCATCAGCTCCATCAACCCCTATTCCTCCTCCACCCCCACCACCACCCTCAGAGGAGAGCTACTTAATGAGAAACGTTCCTGAACGCCCCTTTAAATGCAACCTTTGTCCCAGCTCGACTTTCTCAACGGAGCGTAACCTCCGAAAACACGTGTCCAGTAAGCACAGTAAGCGACCCTCCAACTCTCCACCCACTCCTACTTCTACAACATCCACTACAACGCCCCCTAGTAGTGGCAAGGAGGCTCAGAGCACGGGTGACAGCGGGCGTGACGTCAGCCCAGACCCGCTCCCACCAAGCAGCGACAGCAACACGTCTCCAGAGCAGCCCGCGGCACCAGTGGTTTTGTCCGGCTTGACGTGCTACAAGTGCAGTCAGACCTTCTCGAGCGAGGCTCGTCTCACGGCCCACCTCGAGTCGCACTCAGACCTGCCCTTCAAGTGCCACCTCTGCGAGAACAGCTACGCCGAACGGCACGAGGCGCTGGAGCACATTCGAGCCGTGCACGCGGCCGAATACGAACTGCTCGTGTCCAAGGGAGCATTGGACTCGAGCGCAGAGGACTGCACTGCCAGCGCCCCGCCTGCCCCGctcaacaataacaacaatgaGGCGGGGGAGGACACGCTGGAGAGTCTACGTGGCAAGTTCCCAGACTACGCCAACAGAAAGGTCATGTGCGCTTTCTGCATGCGTCGCTTCTGGTCCGCCGAGGACCTTCGACGTCACATGCGCACGCACACGGGCGAACGTCCCTTCACATGCGACATCTGCTGGCGCAAGTTCACGCTCAAACACAGCATGCTGCGTCATCGGAAGAAGCACGCGGGTCTCGGTGGCTTCGGTCCTGCCTCGGTGGCCGGCTCGGCTGACCCTGCCAGCGATGACGACGCTCACTCCACCGAATCTGGAGAACGCAGCGCCGTAAGAGACGGCCTGAGACGCTGGGCCGAGCACGGACTGGCCGTGTACAGTGGTACCGCCACGGCCGGACGTCTCTCCAGCCTAGGTCGTCCTGAACAGCCGGGAGGCGAGGATGACCTCATTGGTAACTTATTGGGTATCAAGGACCGTTCAATCATCGACCATATGTTGTCCAAGTCAGCTGATGATGCGGCCAAGATGCTTGGAGTGTCCAGTCAACGTTAG
Protein Sequence: MIEISSSFGDNGHQVATSTDSEIDSSVESHSSPVETSPASTEEAPVVTSPASSPVPTSEENLAAGSGVGATDEPANLTGARKRKAHRVVKRETSSEGGQSGVEATEGRSSSSEETTCTEDGVKYVCPVCESVFGSQHEFTVHIRAHNEGSVAGASGATTPPANNNNNNNKVFSCSICGKMLSSSSSLDRHMLVHSGERPFKCRICSVAFTTNGNMHRHMRTHNNNTSSVNNNHQQSLDSDGASSDSAPDKTSSRKRRSNGDLSVPSPKKRSEEGSCVSPPLPCPSCQRCDKCYMTFNSERELSLHRYAAHAPHDDEPIVEEPKQSSAPPHVGFKDLNFVDFSTDKFPLIARAFCERSVHKASSIFHRFQCEDCGRAFPCGSALHIHVASAHSETSPRDLSCPRRKLHYEEQKEDFFAGLDLQTKSPAPSPPPAATPSPIKVRALSELATPRREEEQFENAHYFNNEVRSEEQGARDLADIPSILSVANRGALDLAKSPNSSSDEGLRQMKLRGEFPCRLCTAIFPNLRALKGHNRVHLSAGPPYYCNMCVYNSNDKATLVRHLRTHNGERPFECRLCHYAFTTKANCERHLRNRHNKTSRDDVRRSIVCHLGEETSPERPHECSACDRTFPSRTAAMSHVARDHPTLLASDLVRLGADPEEIEDEEQLMMSPGSSPRPRDRSSSRCSSEDEQPRDAPSPLDLSMDALDLSKKPTPIVTAPAPVPPVVVNNTPPQEAPQDLTKPREVHQPPIIPPHHIPHIPHPFLSHHHPGLPTPPPPSAFFPNPLSMYLGSPFQRPPFPFYMPGLFGSSPSPAATPPPPPPAAPASSLDEVKEQLQKELIRGLQLTSGGSLVMDALRKQPEPPRSPPPPQPTPDVRPDPPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFWSQRPRGGRRAAAPGGSRSTRDPSPLPMPQPEITLLGEPRISEEVKHALAQQLKQKLGGEDSARRLAEQAAEETAAEGDGEDEEDEPELVIDEAPLVPRRSPRDTDADLASVSRLLVNASAQSFQQFFPGQEEDEEEEEGFMEGDDEDEGMLDCEDGSSSEGGPLTSGDEGRASRSDAPKKKSAYSSAPNRVSCPYCHRKFPWSSSLRRHILTHTGQKPFKCAHCPLLFTTKSNCDRHLLRKHSKKNSSPPSSAPSTPIPPPPPPPPSEESYLMRNVPERPFKCNLCPSSTFSTERNLRKHVSSKHSKRPSNSPPTPTSTTSTTTPPSSGKEAQSTGDSGRDVSPDPLPPSSDSNTSPEQPAAPVVLSGLTCYKCSQTFSSEARLTAHLESHSDLPFKCHLCENSYAERHEALEHIRAVHAAEYELLVSKGALDSSAEDCTASAPPAPLNNNNNEAGEDTLESLRGKFPDYANRKVMCAFCMRRFWSAEDLRRHMRTHTGERPFTCDICWRKFTLKHSMLRHRKKHAGLGGFGPASVAGSADPASDDDAHSTESGERSAVRDGLRRWAEHGLAVYSGTATAGRLSSLGRPEQPGGEDDLIGNLLGIKDRSIIDHMLSKSADDAAKMLGVSSQR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -