Basic Information

Insect: Siphlonurus alternatus
Gene Symbol: -
Assembly: GCA_949825025.1
Location: OX463778.1:24092962-24096142[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6.1e-08 7.9e-06 26.6 0.2 2 23 400 422 399 422 0.96

2 8 0.00023 0.029 15.4 0.3 3 23 502 523 500 523 0.94

3 8 1.4e-05 0.0018 19.2 1.9 2 23 555 576 554 576 0.97

4 8 1e-06 0.00013 22.8 0.5 1 23 582 604 582 604 0.98

5 8 0.00015 0.019 16.0 2.9 1 19 610 628 610 633 0.91

6 8 6.3e-08 8.2e-06 26.6 0.7 1 23 639 661 639 661 0.99

7 8 1.9e-06 0.00024 22.0 2.9 1 23 667 689 667 689 0.99

8 8 2.8e-07 3.6e-05 24.6 1.1 1 23 695 717 695 717 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6.1e-08	7.9e-06	26.6	0.2	2	23	400	422	399	422	0.96
2	8	0.00023	0.029	15.4	0.3	3	23	502	523	500	523	0.94
3	8	1.4e-05	0.0018	19.2	1.9	2	23	555	576	554	576	0.97
4	8	1e-06	0.00013	22.8	0.5	1	23	582	604	582	604	0.98
5	8	0.00015	0.019	16.0	2.9	1	19	610	628	610	633	0.91
6	8	6.3e-08	8.2e-06	26.6	0.7	1	23	639	661	639	661	0.99
7	8	1.9e-06	0.00024	22.0	2.9	1	23	667	689	667	689	0.99
8	8	2.8e-07	3.6e-05	24.6	1.1	1	23	695	717	695	717	0.97

Sequence Information

Coding Sequence: ATGGACTCTGCGGAGCGATCGCAGCAGAGGACAGTTTTGATAGAAAACTTGGAACAAGTACGTTCAGACGTTAATAAAATGTCATCTCACGAGACAGATGACAAAAGTGAAAGTGTGTTAAAGCCCCAAGAGGCGGAGCTAGTTGAGGGAGAGCCTGAGTCGCAACATGAAATGGTAATTAACCCTCAATATTTAGAACTGGAGCGAAGTGATCCAGAGGGTCATCAAGCAGTGGTTAAAGTTTCAGCTAATGGTCAGGTCGTATCATGTGAAATGCTACAACATGTAGGGCCTATTGAAGGTGATCAACATCATGGACTAGTTGTTCATGTCTTACCACCAAATCATACAGACTTAAAAGAAGCCACTGCCTACTACGCTCCTGCATCTATAGCTCAACAACTTCACAGAGCAGGGTCTTTGATCACGGAGGAGCGGTACCTTGCAGAGCAGCTCTCCTCCCAGCACTACGAAGATGATCTTCTAACACATGATTTAACTGAAGACGACCGTCGACTGGCTGCTGCCCTAATGTCGGTGCAATATGCTCAGCAACAAAAGCAGCAACAACAACTAAATAAGGCATTGCTTGAACCTGGAAGTATTGTATGTACGAGTTCTTCTGAGGCTAACGTTATCATGAGTGTAAGTGATAGCATGCAAGGTCTAATTGCTACCAATCAACTAAGTAAAGTAGACCAGAGTACCATGAGTGACATGGTTGTTGAGTACATTCACCAAGTAGAAGGTACAGCCCCAAATGATCCTTCTCGTAAACAGATGAGGTTGGTAACATATCATGCAGATACTCAAACCTTGCATGCTGCTCCAGAGCCTCAACAAATACAAACTTTAGAGCAGTCGCCACCTCTTCTGAAGAAGGCCTTGTCAACCCAGATGTCCCCGAGGGCTCGGTACAAGCGATTGTTGGAGCTGGGGGAGGGGCTAGAGAGCACTGAGGTGCCACGTGAGCCAGTCAAGAATGATGAAGAGGAGGAGTTTGATACTGACGAGGATTTGGACGACTCCGAATACGAGGTAGAAAGTGAAGCAAGGTCTTCCCGTCGTAGCTTACCTCACAAAAAGAGAATACCTCAGTCTGAAATTATTATGAAAGAAGCTACTATTGTGAAAGAAGAGATTCGTCACCCCACAGTGATTGTCCAAGACATCCCTCCTGCCCTCCCACCTCCCCTTGTGTGCCCTCACTGTGGCAAAGTGTTCAGACGGCAACGAGCTCTTGAAGCTCATATTAGTACTGCCCACGGCCAGCTGGAAGAAGAAGAGGAAGAACTTGACACCACGGAGCTGATGCCAGAGCATGAGATGGGAGACGATGAAGAAGACGAAAATCTGAAGAAGGAAGCGTGGTTCACTCACCACGAACTCACCAGTGTGGTACCCGCAGGACAAGAGGAACATAAGATGGAAGAAGGCGTAGTACTAACGGAGATCACTGTAGCTGACTTACCTCCAGTCGCAGAGCAGTTTGAGTCTCATCTATGTGACCTCTGTGGAGAAGGCTTTGAGCTCAAGTCTCAATTGACATTGCATATCCGAGAAGAGCATGCAGATACAAAACGTAAGCCACGTAGAAAAGACGTAGGTGCCCAGGCAGGAGGAACGGTGACCGAAGTAGGAAATCGTAAGTGGGAGCAACTGACTTGCCCTACGTGTGGCAGGATGTTTAATCATCGTAACTCGCTGGTGTACCACTTACGCAGTCACACGGGGGAGAGGCCCCATCAGTGTGAGGTCTGTGGTAAGAGTTTCTTCGCAGCAAGTGCCCTCAAGGTCCACATGAGACTCCACTCCGGAGACAAGCCGTACAAGTGTGAGCTGTGTGGGCGCCACTTCCGTCAGTGGGGAGACCTCAAGTACCACTGTATCTCCATCCACACGGACGAGAAGCAGTACCAGTGCGAGTACTGTGGTAAGGACTTTGCTCGCAAGTACAGCCTCATTGTTCATCGTAGAATACACACCGGGGAGAAGAACTACAAGTGTGAGTTCTGTAATAAGACATTCAGAGCTTCAAGTTATCTACAGAACCATCGTCGTATCCACACAGGTGAAAAGCCACACCCCTGTGATGTTTGTGGCAAGCCATTCCGAGTTCGCTCGGACATGAAGCGTCACATGCAGACTCACAACCGCGAGGTTCACCCGGGGAGTGCCCCCACTCCTGCCACAGCCACGGCAGGCAACAGCCAATCATCGCAAGGCAGCGAGCAGGCAGAGTTGCCGGAGATGGAGCCTGTGGCAGCTGAGATCACAGTCCAGGAAGTGGAGGAGAGTCTGGCGTCCCAGCCCCTGGCCATCCCAGCCACCGAGAGAGAAGAAGGAGCGACAGAGACACCTCAGCAGATCTCGGAGCAGCAGCTGAGTGCAGAGGAGGTACAAGAGGAGGTGATGCAGTACTCCAGAGACCCCCTAGAAACAGTAAGGGACGGACCTAACACCCTCTATGTGTGGCCAATATACATGGCATGA
Protein Sequence: MDSAERSQQRTVLIENLEQVRSDVNKMSSHETDDKSESVLKPQEAELVEGEPESQHEMVINPQYLELERSDPEGHQAVVKVSANGQVVSCEMLQHVGPIEGDQHHGLVVHVLPPNHTDLKEATAYYAPASIAQQLHRAGSLITEERYLAEQLSSQHYEDDLLTHDLTEDDRRLAAALMSVQYAQQQKQQQQLNKALLEPGSIVCTSSSEANVIMSVSDSMQGLIATNQLSKVDQSTMSDMVVEYIHQVEGTAPNDPSRKQMRLVTYHADTQTLHAAPEPQQIQTLEQSPPLLKKALSTQMSPRARYKRLLELGEGLESTEVPREPVKNDEEEEFDTDEDLDDSEYEVESEARSSRRSLPHKKRIPQSEIIMKEATIVKEEIRHPTVIVQDIPPALPPPLVCPHCGKVFRRQRALEAHISTAHGQLEEEEEELDTTELMPEHEMGDDEEDENLKKEAWFTHHELTSVVPAGQEEHKMEEGVVLTEITVADLPPVAEQFESHLCDLCGEGFELKSQLTLHIREEHADTKRKPRRKDVGAQAGGTVTEVGNRKWEQLTCPTCGRMFNHRNSLVYHLRSHTGERPHQCEVCGKSFFAASALKVHMRLHSGDKPYKCELCGRHFRQWGDLKYHCISIHTDEKQYQCEYCGKDFARKYSLIVHRRIHTGEKNYKCEFCNKTFRASSYLQNHRRIHTGEKPHPCDVCGKPFRVRSDMKRHMQTHNREVHPGSAPTPATATAGNSQSSQGSEQAELPEMEPVAAEITVQEVEESLASQPLAIPATEREEGATETPQQISEQQLSAEEVQEEVMQYSRDPLETVRDGPNTLYVWPIYMA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -