Salt002410.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Siphlonurus alternatus
Gene Symbol
-
Assembly
GCA_949825025.1
Location
OX463778.1:26667017-26669647[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 7.6e-05 0.0098 16.9 1.3 1 23 442 464 442 464 0.99
2 12 0.002 0.26 12.4 1.5 3 23 472 492 470 492 0.96
3 12 4.8e-06 0.00062 20.7 0.2 1 23 498 520 498 520 0.97
4 12 6.1e-05 0.0079 17.2 2.1 1 23 526 548 526 548 0.98
5 12 1.5e-06 0.00019 22.3 2.6 1 23 554 576 554 576 0.99
6 12 3e-05 0.0038 18.2 0.2 2 23 584 604 583 604 0.96
7 12 1.3e-05 0.0017 19.4 0.6 1 23 608 631 608 631 0.93
8 12 5.1e-06 0.00066 20.6 1.5 1 23 637 660 637 660 0.96
9 12 1.1 1.4e+02 3.9 1.8 1 19 666 684 666 689 0.89
10 12 4.2e-06 0.00055 20.9 2.2 1 23 697 719 697 719 0.99
11 12 6e-05 0.0078 17.2 0.8 1 23 725 747 725 747 0.96
12 12 4.3e-05 0.0055 17.7 4.8 1 23 753 775 753 775 0.99

Sequence Information

Coding Sequence
ATGGACCTGGTCTCCATGGAGCCGCCGTACTTCGTTTGCCATGAGAACTACTACGAGCACCTTTTCAGCATCCTGAGGCGGCTGGACAGTCTGATGGACTGCCACGTGGTGCTGAGTAGCAACGAGCTTGTTCCCACACACAGTTTCGTGCTCGCCGCCTTCAGTGGCTTAGTGCAGAGTCTCCCGCGAACCCCAAACTGCTTGTCATACGTTGTTTTGAGGGATGCCGACCCCTGGAGCGTGAAGAGCTTGCTGGAGTACCTCCACTCGGGTTCCCTGGATATTCCCAAACACAGCCTTACTTGCATGAACACCATTTTACAACTCTTACAAATTGAGTTAGGAAGTGATTTCTACGAACATGAAGATATTGTTCATTTTAGTTTAAAtccaacattaaaatttaatattgtgaaTAAAATTTGGTTGAATAGAAATGAGCAGTGTGATGTTAAAATCCTAACAAAAGGCCTGCAAGTGACATATGCTCATGCCGCCATCCTGTCTGCATGCAGTGAACAACTCTTCACTCTGGTGCGAGCACACACAACTCATTGTAAGCCTGTCTTGATTGTTCTTCAGGAGTTTGAGTACCAAGACGTGGAAACTGTGTTGAAATTTTGTTACCAGGGAGAGGTGGAGATACAGAGAAACAGAGCACGCTTCGTGTGCGAGCTTGCCAAAGTCCTCGGCATCAAAGATCTGTTCAGCACAGTGAGTGACTTGGGACATCACTTGAAGAATAGCCTTCAGTCAAATGGCAACAGAAATCTGTCAAAAATATCCAACTGGGAACACAAGGAAACAACTAGAAAGATATTTAGCACACTCTTTGAAAAAGAAAGTTTATCAGATATTCAATTAATATGTTGTGATCATACTTTCAAAGTCCACAGTGCTGTTTTAAACCTCAGTCCATACTTCCAGTCATTGTTTGAACTAGATGATTGGAGACATTCGTTGATATTCCTGTCGGAGATGTCATTGGAGACGGTGCAGGCATTTGTGGACTACATGTACTACGGGGAGGTGCTGTTCGCGGGCAGTGCTGAAGAGTTTGCTCTCAGCATGCACGGTCTGGTGGACTTCTCGGTGATGCCTGTTAACAACGTGGAAAAGGTCTTGCCAGAGTCAGCTGTCTGGCTGGAACCAACCATGGCCTCGCAGCAGGAGCCGAGCCTGCATAACGTGGGGAAACTAGAACCACCTGCCTATCAAAACGGAGCTGCCTATACTCCTCTGGCTAGTGATATTTCACCTGCATTGCAGAGCACTGATTCTAAGACCAATGCAAAACCCCCACAAGGACAAAAAACCCTGACCTACACCTGTGACACGTGCTCTGCAGTGTTTTACAGTAGACGGTCATTGAAACTGCACCTGAACACACATCCCGAGTCGAAGAGTAGCCATTGCAGCTACTGTGAACAAGTGTTTGATAGACCCAGCCTGCGTCGCATTCATGAGCGCTCTCACACGGGCTCAAGACCTTTTATTTGTGAGGTATGTGGCAAGTCTTACTCGACGCAAAGTGCGCTGGGAAAGCATGGCCAGAGCCACTCAGGAGGCCAGGTGTTCGAGTGTGCTTTATGCAGCCGTACATGTTCTCGCAAGGAGTATTTAGAGGAGCATGTACGCACCCACACGGGCACCAAGCCCTACAAGTGCAACACTTGCGGCAAGCGCTTTGTGGGCAAGACGGGACTCAATCACCATCAAAGGGTGCATGAGCCTCCTCGGAAGGACTCCGTCTGCGAGGTGTGTGGTAAAGCATTCACACGTAAGGCCCTGTGGACCCACATGAAGTCCCATAACAAACAATACCGATGTGAAACCTGCAACAAGTTCTTTTCCACTCCAGCAACACTACGGGCACACAATGCAATGACACACTTTGAAGACAAATTATACCCATGTGACATATGTGGCAAGAAATTTGCAttacaaaatcatttaaatagacataaaaaaaatgtacataatccATCTCGCTTGTACCACTGTGAGAAATGTCCTAAATTATTATCTAGCGAATTAAAACTTAAGGCGCATGATAAATCTAAACACTCTCAGCAAAAAGATAAAAGTTATTCTTGCAATatgtgcagtaaaaaatttactgGACGGAGTGCATTAATGTACCACCAGCGCACGCACACGGGTGTCCGTCCTCATGCATGTGGAGTCTGCACCAAGAGCTTTCTGCGGCCAGATGCCCTGCAGAAGCATCTGCGGAGCCACTCCCGCGAGAGGCCGTATCGCTGTAGCTTGTGTGACCAACGCTGCTCCTCCAAGAGTGCTCTCAACAAACACACAAAGAGACACAAAAATAAGCCAGTGGTGTCAAAAAATTACAAGGCCTTAACATGTGAGATAtcttctaaaatattaaatactgaaGGTGAAAGTTCACAACACATTAAAAACGATCATAATGTTGAAGGTGGTATTGTGGAAATTCTTGACCCATGTGTACTGGAGAGTGCTGAGCCCACACAGTTTGTTCTTCAGGGGTTTCAGAGGGCTGAGGGGGCCCCAGACCTCTCTACTGAAGAGGGGCCTGCCCCGCAGTACATTCAGCTTTATGTACCTTCCAGCCTCACCGAACAAGAGCCCTCACCATATCAATAA
Protein Sequence
MDLVSMEPPYFVCHENYYEHLFSILRRLDSLMDCHVVLSSNELVPTHSFVLAAFSGLVQSLPRTPNCLSYVVLRDADPWSVKSLLEYLHSGSLDIPKHSLTCMNTILQLLQIELGSDFYEHEDIVHFSLNPTLKFNIVNKIWLNRNEQCDVKILTKGLQVTYAHAAILSACSEQLFTLVRAHTTHCKPVLIVLQEFEYQDVETVLKFCYQGEVEIQRNRARFVCELAKVLGIKDLFSTVSDLGHHLKNSLQSNGNRNLSKISNWEHKETTRKIFSTLFEKESLSDIQLICCDHTFKVHSAVLNLSPYFQSLFELDDWRHSLIFLSEMSLETVQAFVDYMYYGEVLFAGSAEEFALSMHGLVDFSVMPVNNVEKVLPESAVWLEPTMASQQEPSLHNVGKLEPPAYQNGAAYTPLASDISPALQSTDSKTNAKPPQGQKTLTYTCDTCSAVFYSRRSLKLHLNTHPESKSSHCSYCEQVFDRPSLRRIHERSHTGSRPFICEVCGKSYSTQSALGKHGQSHSGGQVFECALCSRTCSRKEYLEEHVRTHTGTKPYKCNTCGKRFVGKTGLNHHQRVHEPPRKDSVCEVCGKAFTRKALWTHMKSHNKQYRCETCNKFFSTPATLRAHNAMTHFEDKLYPCDICGKKFALQNHLNRHKKNVHNPSRLYHCEKCPKLLSSELKLKAHDKSKHSQQKDKSYSCNMCSKKFTGRSALMYHQRTHTGVRPHACGVCTKSFLRPDALQKHLRSHSRERPYRCSLCDQRCSSKSALNKHTKRHKNKPVVSKNYKALTCEISSKILNTEGESSQHIKNDHNVEGGIVEILDPCVLESAEPTQFVLQGFQRAEGAPDLSTEEGPAPQYIQLYVPSSLTEQEPSPYQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01348115;
90% Identity
iTF_01348115;
80% Identity
iTF_01348115;