Salt004621.1
Basic Information
- Insect
- Siphlonurus alternatus
- Gene Symbol
- -
- Assembly
- GCA_949825025.1
- Location
- OX463779.1:2447547-2449880[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.021 2.7 9.2 1.6 1 19 95 113 95 118 0.88 2 18 0.0058 0.75 11.0 1.2 3 23 123 144 121 144 0.92 3 18 0.0011 0.14 13.3 0.1 1 23 175 197 175 197 0.95 4 18 0.00016 0.02 15.9 3.9 1 23 201 223 201 223 0.99 5 18 0.0015 0.2 12.8 3.0 2 23 231 252 230 252 0.96 6 18 0.0045 0.58 11.3 4.5 1 23 291 313 291 313 0.98 7 18 0.00036 0.046 14.8 0.1 1 23 320 342 320 342 0.99 8 18 0.0074 0.95 10.7 8.3 1 23 362 384 362 384 0.99 9 18 7.8e-05 0.01 16.9 0.8 2 23 404 425 403 425 0.97 10 18 3.4e-06 0.00044 21.2 0.3 1 23 431 453 431 453 0.98 11 18 0.0024 0.31 12.2 1.1 1 23 459 482 459 482 0.93 12 18 0.25 33 5.8 5.5 1 23 488 510 488 510 0.95 13 18 0.02 2.6 9.3 5.8 1 23 515 537 515 537 0.95 14 18 7.7e-05 0.0099 16.9 1.3 2 23 544 566 543 566 0.93 15 18 0.00031 0.04 15.0 0.8 2 23 572 594 571 594 0.92 16 18 7.1e-06 0.00091 20.2 1.8 3 23 602 622 600 622 0.96 17 18 1.5e-05 0.0019 19.2 3.2 1 23 629 651 629 651 0.98 18 18 0.00018 0.024 15.7 5.7 1 23 657 679 657 679 0.99
Sequence Information
- Coding Sequence
- ATGGAGGACAGTTTTGCGGACGTTGAGTTCTTCGGTGAACCGGACACTGTTCCGGATACTGTCCCGGACACTTTCCTGGACACTTTGTGTGAGCCGGACATCTCCAGCCAGCCAGAAAGAGGGGAGGCCAAGAAACGTCCAGTCAGGCGGAAAACGAGCTCAAAGTGGGCAGACTTGGTTCTGGAGGAAGCCCCGGCAAAGAAGAGGAAGGTGGTGAAGAAACCGCCGACGAAAGATAAAACCTCGGCAAAAAGGAAGAAGCTGGTGACTGCAGAGAAGAAGTTTGCTTGTCCGCTGTGCACACTGAGGTTCAAGAATGCGGGAACTCTGAAGGGCCACTGTCTGCGCAGACACCCCTCTAACTGCTGTCTTCTGTGTGACAAAGTTCTTGGAGACAGCAAGCAGCTTCAGCGACACGTGCAAGAGACTCACGGGCTGCGCTGTCGCTGCTGTCACCACGACTTCTCGTCCGAGGCTGCGCTGTCGCAGCATTTTCTGGATAACCACCCTGAACTACGACCCTTCCCCTGCGCCCTGTGCGACCTGAGCTTTGTGGACAGCAGGCAGTTGGCGGAACATAAAACTCAGCACCTGAAAACGTTCCAGTGCCACGAGTGTGGTCTAGACTGCGACAACTTCGAGCAGTTACTGCGACACCAGCGCTCCCACCGTCCCGCGAGACACCAGCTGAACTGCGACATTTGTCACAAGACGTTCATGCTGCGACGAACTATAGAGAAGCACATGCGACAACATGTAGAGGGTGTCCCAAGTCAGTGTGACGTTTGTCTTCGCTGGTTCTTGTCTGTAGAACTGCTAGCGTCACATGCCAAAAAGCACCATCGTCCTGCGACACCTCCGGAGAAAAGGTTTGTGTGTAATCTTTGCGACGCTTGTTATCAGTATCGTACAGAACTCAACCACCATCTAAAAAATCACAAGCCAGGGAGGTGGGACTTCAAGTGTGGTATTTGTGGCGGGGTTTTTAAATCAGAAAACTTCGTCCTAGCTCACATCAAGACTCACTCGGAAGCTGAAATGTCCAGCAAGAAGTGTGCAGACTTGTTCTCTAAAGTGTCCGATTTCCAATGTGGCGTCTGTGAAAAGTTTTGTTACAGCAGACATTACCTGCACCTCCACATGAGGAGCCACAGGGAGGGGTTTGAAGAAACGAAGGTTGTACACCCGGTGAAGAACAGACCAATTCTCAAGTGTGGAACCTGCCAGAAGGATTTTTATCAACTGAATCTCCTAAGGAACCACATGGCCACACATCTGACAGTAAAACCATTCAACTGCAGTGTCTGTGGCAAGGGGTTTAGTATTGAGCGTTCTTTGACCATTCACATGCGCATGCATACCGGCGAGAGGCCTTTTCTGTGCGACGTTTGTGGCAGAGGCTTCACCAGTCAAATCAGCGTGCATaatcacaaaaagaacattcacGAGAAGGAGCTCAGGTTCTTTTGCTCGGTGTGCGACAAAGGATTCTACAAAAAATTCAACTGTCGCACACACGAAGAGAAACACAAGAATGAAAATCATTCCTGCGAGACTTGCCACAGGTCGTTCAAGAGCGAATGGCTGATACGTCGACATGTTTGCGGCCATCAGAACCCGGAGCAGGTAAGTTGCGACATCTGTCACAAGACGTACACCAGCTCCAGAAACCTAGCTGAACACAAGAAGGACGTTCATTCAGCATTAGACTTAGAGTGTGCAATATGTGGTAAGAAATTCAAAAGTACCGTTCGTTTAAGAAAACATAGATATAATGTACATACAAGGACAAGCAATTTGTTCTGTGAGATTTGTAATAAGTCTTTCAAGTCTAAACAGCAGCTAAATCTCCATAGAGACACACATGATGAAGCCTCTAAGAAGTTTGAATGTTCGGTGTGCAGAAAGAAGTTCAGAGTCCTGGGGCACCTCAAGATTCATCAGCGTCGGCATACCGGGGAGATGCCGTACAAGTGCCAGCTCTGCAACCGTCAGTTCCGGCACGATACCTCCCTCAAATTGCATATGAAGAAACACGAAGCTTATGAGAACGGAGTCATTCCAGAGCCAACAAAAAGAGTCAAAGCCGACAAGCCGGCGAAAATTCCACGAGAGAAGACTAAAAAGTCCCCTATGAAGAAAGCAGATGTcccaaaagaaaagaaaagtcgTGGCAAAAAGTCCCCTAAGAAGAACTTGCCAGTGTTGCCAGATCAGGCTGCAGCGTTGCCAATTTTCTCCTCTGAGGACCCAATGGCAGGAGTCTGTGTACAGTTACCCGACAATTTTCAGTGTGTGGAGGGTGTGGAGATAGAATTCGTACTGAACCTGTAG
- Protein Sequence
- MEDSFADVEFFGEPDTVPDTVPDTFLDTLCEPDISSQPERGEAKKRPVRRKTSSKWADLVLEEAPAKKRKVVKKPPTKDKTSAKRKKLVTAEKKFACPLCTLRFKNAGTLKGHCLRRHPSNCCLLCDKVLGDSKQLQRHVQETHGLRCRCCHHDFSSEAALSQHFLDNHPELRPFPCALCDLSFVDSRQLAEHKTQHLKTFQCHECGLDCDNFEQLLRHQRSHRPARHQLNCDICHKTFMLRRTIEKHMRQHVEGVPSQCDVCLRWFLSVELLASHAKKHHRPATPPEKRFVCNLCDACYQYRTELNHHLKNHKPGRWDFKCGICGGVFKSENFVLAHIKTHSEAEMSSKKCADLFSKVSDFQCGVCEKFCYSRHYLHLHMRSHREGFEETKVVHPVKNRPILKCGTCQKDFYQLNLLRNHMATHLTVKPFNCSVCGKGFSIERSLTIHMRMHTGERPFLCDVCGRGFTSQISVHNHKKNIHEKELRFFCSVCDKGFYKKFNCRTHEEKHKNENHSCETCHRSFKSEWLIRRHVCGHQNPEQVSCDICHKTYTSSRNLAEHKKDVHSALDLECAICGKKFKSTVRLRKHRYNVHTRTSNLFCEICNKSFKSKQQLNLHRDTHDEASKKFECSVCRKKFRVLGHLKIHQRRHTGEMPYKCQLCNRQFRHDTSLKLHMKKHEAYENGVIPEPTKRVKADKPAKIPREKTKKSPMKKADVPKEKKSRGKKSPKKNLPVLPDQAAALPIFSSEDPMAGVCVQLPDNFQCVEGVEIEFVLNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -