Salt021007.1
Basic Information
- Insect
- Siphlonurus alternatus
- Gene Symbol
- ken
- Assembly
- GCA_949825025.1
- Location
- OX463785.1:25170264-25173902[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.3e-06 0.00017 22.5 0.5 3 23 196 216 194 216 0.97 2 12 0.00054 0.07 14.2 6.9 1 23 222 245 222 245 0.95 3 12 0.00076 0.098 13.8 0.1 2 23 252 274 251 274 0.94 4 12 0.00085 0.11 13.6 1.4 1 23 279 302 279 302 0.95 5 12 4.5e-06 0.00058 20.8 0.2 2 23 309 331 308 331 0.94 6 12 5.2e-06 0.00067 20.6 0.7 2 23 338 360 337 360 0.96 7 12 7.9e-05 0.01 16.9 6.1 1 23 366 389 366 389 0.96 8 12 3.1e-05 0.0041 18.1 0.9 1 23 396 419 396 419 0.96 9 12 0.0013 0.16 13.1 0.7 1 23 425 448 425 448 0.89 10 12 0.0049 0.64 11.2 4.2 1 23 454 477 454 477 0.90 11 12 8.1e-05 0.01 16.8 3.7 1 23 486 509 486 509 0.96 12 12 5.4e-06 0.0007 20.5 4.2 1 23 514 537 514 537 0.97
Sequence Information
- Coding Sequence
- ATGGATTCTACGGTGGACCAATCACAGCCGAGCACAAATTTGATGGACCAATCACAGCTGAGCATCAAGGAGGAGCCCGTGTGGATGGGCGACGAGCAGACGGAGACGTTTGTCATGAAGGAAGAAGTTGACGTCAAACTGGAGGCTGAGGAGAACGAGGAAACTCAGACGGAGGGAGAGAAGATCCACGTGACCCCTGACCTACCCCCCTGGCCGCAGAGCACCCCCTCCAAGAAATCTCGGGGCAGGCAGCGCAAGCTGCCCTCCCCTCCCCCCGCCAAGCCCACCCGAGCCAGTCGCAGAAACGTCAAGCAAGAGCCTGTCAGCCAGGATGATTCCTCCGAGAAGCCACCAGTGACCTTGAGCCTCCAGAGTCTGCGAGATTCCATCAAGGCTAAGAGTCTGCGGACAGTCCCGGACACCAAGAGTGTCCGGGACGTCCAGACAAACTCCATCAAGGTCAAGAAGGTCGTTGACCCGGACGTCCAGATGGAGAGTGAGGAGGAAGAAGATGAAGAGTACACTCCTCCGAGGAAAAACAAACGCGGCAGAAAACCGAAAGCAGCGACGGACTCGGTGAGCAACTGTCCTGAGTGCAACAAAGAGTTCACCTCCGTGCGGAACTTGAAAACCCACATGCTGGTCCACTCTGGAGACCGTCCGTACTCCTGCAAGTTCTGCAAAATGAGCTTCAAGCAGCACTCCCACGTCAAACGCCACATTTCCTACATTCACATCGGAGAGAGGAACAGCAAGTGCGAGATTTGTGGCAAGAATTTTGCAGACGTTTACATTCTGAAGAGACACGTGGCCTCGGTGCACGACAAAAAACGGTACACGTGTGAAAAGTGTTCGAGGTCCTTCGCTGCAAAATGCTACCTGGACCGACACATTGAGGAGGTGCATGAAAATAGCACGCCGATCGTCTGCAGTGAATGTGACAAACAGTTCAAGTCTCAGCAGAATCTGGCCAAGCACGTGGCCTCAATTCACCTCAACAAGGGCAAGCAGTACTGCCCAGAGTGTGGCAAGGAATTCTGTAGCTTGTACGGCATGAAACGGCACATCGAAACGGTTCATTTGAAGGAGAAATCCCACGTCTGTGAGTTCTGTCAGAAATGTTTCGCCCACAAACCAACATTAAAGAAACACATTAACTCCGTACACAAAAACAACATGCCTAAGTTTTACTGCGACATGTGTgaaaaagttttcaaaagtAAAATGAACGTTCGACTGCACATCACCCGCGTGCACTTCAAGGAACGGAACTTCAAGTGCACTCACTGTGACAAGAAATTCTACGCCCTGCTAGCGTTGCAGTCTCATGTAGCTGCGATTCACTTAAAGAGTCGCAGACATCAGTGTCGCGTCTGCAGCAAGACGTTCAGCTTCAAAACCTACGTGCGGCGTCACGAATACAATGTTCACAAGTTCCAGCTAAATCCCGGCACCCACGAGTGCAAGGTGTGCAAGAAACGGTACCACCAACTGAACAACCTCAACGTCCACATGAGGGCGGAGCATTCCGGCATCGAGTACCACTGTGACTTCTGTGACACCAACTTCAAGAGCAAATACAACCTGGCCAAACACATGGAGACAAAGCATAAGATGGAGTCAACCAACAAAAAGAAGTAA
- Protein Sequence
- MDSTVDQSQPSTNLMDQSQLSIKEEPVWMGDEQTETFVMKEEVDVKLEAEENEETQTEGEKIHVTPDLPPWPQSTPSKKSRGRQRKLPSPPPAKPTRASRRNVKQEPVSQDDSSEKPPVTLSLQSLRDSIKAKSLRTVPDTKSVRDVQTNSIKVKKVVDPDVQMESEEEEDEEYTPPRKNKRGRKPKAATDSVSNCPECNKEFTSVRNLKTHMLVHSGDRPYSCKFCKMSFKQHSHVKRHISYIHIGERNSKCEICGKNFADVYILKRHVASVHDKKRYTCEKCSRSFAAKCYLDRHIEEVHENSTPIVCSECDKQFKSQQNLAKHVASIHLNKGKQYCPECGKEFCSLYGMKRHIETVHLKEKSHVCEFCQKCFAHKPTLKKHINSVHKNNMPKFYCDMCEKVFKSKMNVRLHITRVHFKERNFKCTHCDKKFYALLALQSHVAAIHLKSRRHQCRVCSKTFSFKTYVRRHEYNVHKFQLNPGTHECKVCKKRYHQLNNLNVHMRAEHSGIEYHCDFCDTNFKSKYNLAKHMETKHKMESTNKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -