Salt011574.1
Basic Information
- Insect
- Siphlonurus alternatus
- Gene Symbol
- -
- Assembly
- GCA_949825025.1
- Location
- OX463781.1:7672110-7679870[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6 7.7e+02 1.5 1.1 1 23 297 320 297 320 0.93 2 14 0.0061 0.79 10.9 0.1 2 23 337 358 336 358 0.95 3 14 2.7e-05 0.0034 18.4 0.3 1 23 364 386 364 386 0.97 4 14 0.0002 0.026 15.6 0.3 3 23 394 414 393 414 0.98 5 14 0.0098 1.3 10.3 0.6 1 23 420 442 420 442 0.92 6 14 0.18 23 6.3 0.7 1 13 448 460 448 462 0.88 7 14 0.0015 0.19 12.8 0.2 1 20 547 566 547 568 0.94 8 14 1.6e-05 0.0021 19.0 0.5 2 23 586 607 585 607 0.97 9 14 0.00012 0.015 16.3 5.2 1 23 613 635 613 635 0.97 10 14 0.00017 0.022 15.8 0.6 1 23 641 663 641 663 0.97 11 14 4.7e-05 0.0061 17.6 0.4 1 23 669 691 669 691 0.96 12 14 7.7e-07 0.0001 23.2 0.3 1 23 697 719 697 719 0.98 13 14 1.3e-07 1.7e-05 25.6 0.5 1 23 725 747 725 747 0.98 14 14 1.2e-05 0.0015 19.5 0.6 1 23 753 775 753 775 0.98
Sequence Information
- Coding Sequence
- ATGGCCCCGTCCGCGAACTTTGTTGATTTATGTCGAATTTGTGCCACAGAAACACAGAGTATCGTTAGACATTTTATCTTTGAAGGTGAAGGAAAGCTTCGTGATCTCTCTAAAAAAATCGCAGCTTGTCTACCTGTAAAGGTAAAAGAAGATGATCGCCTTCCTAAAGTGTTATGTGGAGAATGTGTATATAAGTTGGACTTGCTACACGAGTTTAGAGAAAAAAGTCAAAAGACAGAGGCCTATCTTTTTACATTGATAGACCCAACAGACAATGATCATCACGTCAAAAAGTCAAGCTCATCCCAACTGCAGGATGATGAAGAAGAGGACGATGATGATGACTCTCGAGGGGGAGACGACCTCGACACTCACGACGATGACGTCGATGAGCCAGAGGAGGCCCCCCCTGCAGCGAGAGCGGCGCCCCAGCCCGGCCAAATCTGCGAGCCCGAGGTGGTGATCAAGGTGGAGGAGGAGACGATGGACCGTCAGAAGGCCTCTGCCGCCGCCACCGAGGCAGCTCCCACCGCAGCAGCAGCTGCCCCAGAACCTGACCAAGACACCGGCGGACCGTCATCGAGCAAGAGACCCCGTCGAGCAGCGGCCAACAAGAGGCCCATCCGAGAAGACTCGCCGTCCCTGGAAGCCCCCagctccccccctccccccaaacgTCGAGGACGCAAACCCAAGAGCCAGACCACGCCCACCCCAGGCACAAGCACCTCTGGGCCGTTAAGGCTTCGCAAGGCTACTAGGCCACAACCAGAGCTGACTGAGGACGTTACAAGTTGCGAGCAAGAACCCCAGAAATGTCCCCCTATTTTGTCCTCTTCCCCCACAGAACAAGCATTGATTGAACCTGAAAGGTCTAAAACAACTCTATATAAATGCATTCACTGTCTGAAACTGTATGCTAGTTTTGAGGAGGTGCAGACGCACATTGTATCGAAGCACTTAAATATTCAGAGACCAGACATTCCAAAGTTAGCTGGTAAGAGGGTTCAATGTGAGCAGTGTGGTGAGACGTTTGGAAACACTCGTAGACTGGTAGACCACCTGAGCGAGCATGCAGGTGCTAGGCCGTTCACATGTGAGCTATGTGATCGTAGTTTTACCTCTCGAGGCCGTCTTGAAGCTCATGCAGAGAAGCACATGTCAGGCTGGAAAAACATTTGTACCCACTGCAATATGGGGTTTGCCTCTCCCAACGATCTAGACATTCATGTCAGAACGCACACAGGCGAGCGACCTTTTGCCTGTGATGTGTGTACGGAGGTTTTCATTTCCAAGACTGCAATGATGAATCATAAGGTGCATCACACAACTCAGCCAGATTATATTTGTGAGGAGTGTGGCAAGCGTTGTGCCTCCTCTGCTAAGCCGACGGTACAAGTCGCGCCATCACCCGCCGCCGCAACCCCCAATGTTGTCTTGAACGTTTATGCTGATGAGGAAGCGAGGCCGTCGTCACCACCCGATGGTTGCCGCGACGAAGTCCCTCCTCCTCCCGCTGCAGAGCTGAGTGTTGAAGTCGCGGTGTCTGAGACGTTCTTCCAATGTAAATACTGCTGCCAATTGTACGGCAGTCTTGAGCTGACTCGCTCCCACATATCGGCCCAGCACCCGAAGGTGCACGTATGTGAAGTTTGTGAGAAGGGTTTCCGAACCATCGAGGCGTTGCAGGCACACAAACACGAGTATGTGCGCCAGGTTGAGGTCGAGGCGGAGCGAAAACGCTTGCAGGTCAAGAGTTGCGAGGTGTGCGGCAGGAGGCTGAGAAACGAGCGAGCTTTACAAGCGCACATGCGGAAACATCGCGGCGAAAGACCCTTTCAATGCGAGTACTGCGAGAAAGCCTTCTGTCACAGGACTGGCCTGAAGACACATCTCGTCAAACATACTAATAAATGGTCACATGTTTGTGGGTTCTGCGGTCGTGGTTTTGTTTCCAAGACTGCTTTTGAAATACACGAGCGGAGTCACACTGGCGAACGGCCATATACGTGTGATCTTTGCGGGAAAGGTTTTATATCAAAGCAAAAGCTTCAGTTACATAATTTGGTCCATACGGGCGTGAAGTCATTTATTTGCGAGACGTGCGGTCGACCGTTCTCTCGTCGCGAGGCTCTTATTATGCACCGTCGTACGCATACAGGTGAGCGTCCGTACGTATGCGATGTTTGCGGCCAGGCTTTCACACAAAAGTCCTCTCTCAACACGCACCGGCGTCTGCACACGGGGGAGCGGCCATATAGCTGCGAGTCGTGCGGCAAGGGCTTCACCTCCAAGTCGGCTATGGTGATGCACCTAAAGAAACATTGTTAG
- Protein Sequence
- MAPSANFVDLCRICATETQSIVRHFIFEGEGKLRDLSKKIAACLPVKVKEDDRLPKVLCGECVYKLDLLHEFREKSQKTEAYLFTLIDPTDNDHHVKKSSSSQLQDDEEEDDDDDSRGGDDLDTHDDDVDEPEEAPPAARAAPQPGQICEPEVVIKVEEETMDRQKASAAATEAAPTAAAAAPEPDQDTGGPSSSKRPRRAAANKRPIREDSPSLEAPSSPPPPKRRGRKPKSQTTPTPGTSTSGPLRLRKATRPQPELTEDVTSCEQEPQKCPPILSSSPTEQALIEPERSKTTLYKCIHCLKLYASFEEVQTHIVSKHLNIQRPDIPKLAGKRVQCEQCGETFGNTRRLVDHLSEHAGARPFTCELCDRSFTSRGRLEAHAEKHMSGWKNICTHCNMGFASPNDLDIHVRTHTGERPFACDVCTEVFISKTAMMNHKVHHTTQPDYICEECGKRCASSAKPTVQVAPSPAAATPNVVLNVYADEEARPSSPPDGCRDEVPPPPAAELSVEVAVSETFFQCKYCCQLYGSLELTRSHISAQHPKVHVCEVCEKGFRTIEALQAHKHEYVRQVEVEAERKRLQVKSCEVCGRRLRNERALQAHMRKHRGERPFQCEYCEKAFCHRTGLKTHLVKHTNKWSHVCGFCGRGFVSKTAFEIHERSHTGERPYTCDLCGKGFISKQKLQLHNLVHTGVKSFICETCGRPFSRREALIMHRRTHTGERPYVCDVCGQAFTQKSSLNTHRRLHTGERPYSCESCGKGFTSKSAMVMHLKKHC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -