Salt004627.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Siphlonurus alternatus
Gene Symbol
-
Assembly
GCA_949825025.1
Location
OX463779.1:2503711-2514914[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00024 0.031 15.3 0.4 1 19 233 251 233 254 0.94
2 15 0.0004 0.051 14.7 3.4 3 23 280 300 278 300 0.95
3 15 9.6e-05 0.012 16.6 2.5 1 23 318 340 318 340 0.98
4 15 0.00037 0.048 14.8 0.1 1 23 347 369 347 369 0.99
5 15 0.00011 0.014 16.4 6.1 1 23 389 411 389 411 0.99
6 15 0.0004 0.051 14.7 1.8 2 23 431 452 430 452 0.97
7 15 3.6e-06 0.00047 21.1 0.3 1 23 458 480 458 480 0.98
8 15 6.4e-05 0.0082 17.2 0.3 1 23 486 509 486 509 0.95
9 15 0.012 1.6 10.0 0.5 1 23 515 537 515 537 0.96
10 15 0.016 2 9.6 2.8 2 23 544 566 542 566 0.92
11 15 0.57 73 4.7 0.8 1 23 573 596 573 596 0.94
12 15 6.6e-07 8.5e-05 23.4 2.5 1 23 601 623 601 623 0.98
13 15 1.3e-06 0.00016 22.5 1.7 2 23 630 651 629 651 0.96
14 15 0.029 3.7 8.8 3.2 1 23 658 680 658 680 0.91
15 15 1.1e-05 0.0015 19.5 0.8 1 23 686 708 686 708 0.97

Sequence Information

Coding Sequence
ATGTCCGAGGAGCTTTTGGAGGAGTTTGATGGTCTGCCGGACCGTCCGTGCCGCGTGTGTGCCGCGGGGGGCAACTTTGACATGGTGGAGATCTTCGGACAGGAGGGCTGTCAGCGAGGACTGGCCGACCTCATCCACCGCTACCTGCCCATCCAGGTTGATTGCTGTGACGAGCTGCCGCTGCAAGTTTGTGTGAGCTGCGTGCTTCGTCTGGAGGGGAGTCACGAGCTGTCTCGAGTTTGTGCCGCCGCAGATGTCACTCTGAGGACCCTCTACCTCAAACAGGAGCAGCGAGAAGAGGCCCTTCACTCACCGATGGCTTGTGTCGAGGATAGCTTTGCGGACGTTGAGTATTTTGGTGACCCGGACACTTTCCCAGACACTTTGTGCGAGCCGGACATTGAACCGTTCACGTGGAGTCGTCCAGCCAGCGTTTTGAGTGAGGACGCCACGTCTGTCCATAGACGTCCAGGACGTCCGGTGAGGAGAAAGAAAGAGAACTCCAGGTGGGTGGACTTTGAACTAGAGGAAGTTCCGGTGGTGAAGAGAAGGGTGGGGAGACCAACCGTATTGGCACCCCAGGGGAAGAAACCGACCGTGTTGGCTCCCCAGGTAAAGAAAACGACCGTGTTGGCTCCCCAGGTGAAGAAACCAACCGTGTCTGCAAGGAAACTGACCACGAAGAAGGAACAGAACTTTCAATGTGTCCTCTGTCCAAGAAAGTTCAAGTCCGCGAAAGCCCTCAACAGACACTctctgagaaaaaattgtgGCGTGCACATCACGATACAACAAAGTGAGACAAAAAGTAATGTGACACACGAAGTTGAGGTCTGTTGCGACTTTTGCCAGCGGACGTTTAACACGAAAATTGGACTGAGAAGACACATGTATCAACATGTTAGGGGAGACAGGAAGTCACAAAAGAGCTTGAAGGAGAGAGCTAGGAAGTTTGTATGTCACCTGTGTGAGAAGTCGTACGTGAATTACAATGACCTGTATCAGCACCTGAGAAACCATAAACCAGGGAGGTGGGACTTCAAGTGTGGTATTTGTGGCGGGGTTTTTAAATCAGAAAACTTCGTCCTAGCTCACATCAAGACTCACTCGCAAGCTGAAATGTCCAGCAAGAAGTGTGCAGACTTGTTTTCTAAAGTGTCCGATTTCCAATGTGGAATTTGTGACAAGTTTTGTTACAGCAGACATTATCTAAACCTTCACATGCGGAGCCACAGGGAGGGTATCGTAGATCTGAACGTCATAGACCCTGTGAAGAAGAGGCGGGTCATGAAATGTGGGACTTGCCACAAAATCTTCTACAAGCTGGACGCCATGAAGAACCACATGGCCACCCATCTGACAGTAAAACCGTTCAACTGCAATGTCTGTGGCAAGGGGTTCAGTATTGAGCGTTCTCTGATTGTTCACATGCGCAGGCACACCGGCGAGAGACCTTTTCTGTGCGACGTTTGTGGCAGAGGCTTCACGAGTCAAATCACCGTGCAAAGCCACAGAAGGACCGTTCAcgagaaaattaaaaacttcTTCTGTTCCATTTGCAACAGAGGGTTCTTCAAAAAAGGAGCTGCCAAGATTCATGAGGAGACACACACCTACGGCAAGCAATGTCCGTGCGACACCTGCGGTAACTTCTACAAAACAAAGACCTCCATGAAAATCCATAAAATGAGAGCTCACTCCGAATTCCATGAAATGTTCCCGTGCGAAATTTGCCTGCGAGAGTTCGACTGCAAAGCTGCTCGAAAAACCCACATGAATTTGGTTCACGCCGGTAGGGGTTTTGAGTGTGGAAAGTGCGACAAAAAGTTCAAGACTTTGAAACATCTAAGAGCTCACATGGAGATTCACTCGGAACGCACGCTCGTGACTTGCGAACTTTGCGAGAAATCTTTCAAAACAAAAAGCCATTTGAAAATTCACCTTGAGATTCATGCCGGAGCAGAGAAGAAATATGAATGTATCGTGTGTCATAAAAAATTCAGGGGTTCCAATCACCTGAAAGTACATGATCGGATTCACTCTGGACTAAAACCTTTCGTGTGTGGACTTTGTACGAAGGCGTTTCGTCACAAAAACGCTCTGCAGGCTCACTTGAAAGCACACTCGCGCACGGAGGACGGAGTCGTAAAAACCGGAAAGAAGAAGAAGGCAAAACTCCCAGGGGAGAGAAAGATCAGAAAGGCACCGTCAAAACCAGCAGGGGAGGGGAAACGTCGCGGCAGGAAGCCAGGCAAGAAGCAGGCTGCAATGTTGCCAGATTTCTGTAATCAAGCTGCAATGTTGCCAGACTTGTGTCATTTTGAGGAGCTGCCAGAGAACATGCAATGTGTTGAAAACATTGAAATTGAATACGTGGTGACCGCAAGTGAAGTTTTACCTGAGTGA
Protein Sequence
MSEELLEEFDGLPDRPCRVCAAGGNFDMVEIFGQEGCQRGLADLIHRYLPIQVDCCDELPLQVCVSCVLRLEGSHELSRVCAAADVTLRTLYLKQEQREEALHSPMACVEDSFADVEYFGDPDTFPDTLCEPDIEPFTWSRPASVLSEDATSVHRRPGRPVRRKKENSRWVDFELEEVPVVKRRVGRPTVLAPQGKKPTVLAPQVKKTTVLAPQVKKPTVSARKLTTKKEQNFQCVLCPRKFKSAKALNRHSLRKNCGVHITIQQSETKSNVTHEVEVCCDFCQRTFNTKIGLRRHMYQHVRGDRKSQKSLKERARKFVCHLCEKSYVNYNDLYQHLRNHKPGRWDFKCGICGGVFKSENFVLAHIKTHSQAEMSSKKCADLFSKVSDFQCGICDKFCYSRHYLNLHMRSHREGIVDLNVIDPVKKRRVMKCGTCHKIFYKLDAMKNHMATHLTVKPFNCNVCGKGFSIERSLIVHMRRHTGERPFLCDVCGRGFTSQITVQSHRRTVHEKIKNFFCSICNRGFFKKGAAKIHEETHTYGKQCPCDTCGNFYKTKTSMKIHKMRAHSEFHEMFPCEICLREFDCKAARKTHMNLVHAGRGFECGKCDKKFKTLKHLRAHMEIHSERTLVTCELCEKSFKTKSHLKIHLEIHAGAEKKYECIVCHKKFRGSNHLKVHDRIHSGLKPFVCGLCTKAFRHKNALQAHLKAHSRTEDGVVKTGKKKKAKLPGERKIRKAPSKPAGEGKRRGRKPGKKQAAMLPDFCNQAAMLPDLCHFEELPENMQCVENIEIEYVVTASEVLPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-