Salt011921.1
Basic Information
- Insect
- Siphlonurus alternatus
- Gene Symbol
- -
- Assembly
- GCA_949825025.1
- Location
- OX463781.1:12215477-12222493[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.024 85 3.9 0.3 19 34 22 34 18 48 0.78 2 8 0.009 31 5.3 1.1 14 35 71 102 62 103 0.75 3 8 4.9e-05 0.17 12.5 0.1 16 43 128 152 120 153 0.88 4 8 0.14 5e+02 1.4 2.5 18 33 160 175 155 179 0.84 5 8 0.024 84 3.9 1.2 14 38 200 221 193 226 0.81 6 8 0.0007 2.5 8.8 0.8 17 42 267 289 261 291 0.83 7 8 0.0011 3.9 8.2 0.1 17 38 320 338 314 343 0.88 8 8 0.0061 21 5.8 0.3 18 43 351 373 347 374 0.82
Sequence Information
- Coding Sequence
- ATGAGTGATTGGACGAGCTCTACACTTGCCTCCTCGGAGTTAATGGAGTTCAAACCTTTCGCTTGCGACTTGTGCAGCAAAACTTACTCGGACTCTAACCACCTTGCAAGACACAAGAACAACATTCATGGGAGAGACGCTCATCCAATAACGTGCTCCGCAACGTGGGGTCCTGAGACAAGTCATGCGGAGTACAACACTCGTCTCTTGGAAAATCGATTTTGCTGCAAGTTCTGTGACAAATCTTACTCTGCAAACCGCCTCCTCGTGCGGCATGAGAAAAACATTCACGGAAGTGAATGTCTGGTTATACGTCGGGTTTCTCGCTCATCTACTACTGGCACACCTCCTATCTCCCCGGCTCCTGTGGATAATCAGCTGCGATGGCAGTGCACGGTGTGCGGTAACAACTACAAGTCAAGCTTCAACTTGAAGGTTCACATGCGCAACATCCACGGTCCTGACTCTCGGCCATGCACGTGTCCTCTGTGTGGTTGTGTGTACAAGAATGCACACTCTCTGCAGTGCCACGTGCAGGCGAGGCAGGGTGCGTGGCAGCTAGAGCCGAGTTGCAACCTCATGAGTGCCAGATCTAAGGAAAGACGTCACGCGTGCGAGGCGTGTGGCAAGGCTTACAACACCGTGAGCAACCTGAACGCCCACAAGCGCAACATTCATGGAGAATTTGCTCAGCACACCCAGTGCCCCATCTGCAATGGTTCTGAAACTTGCTTGTTCTCCACAGGCCTCGGTGCGGCCACGTGGTTGCCACCCCCCGCCCCCCAACTGGTCAAAGCCCACACGTGCGCGCACTGTGGCAAGGGATACACCGAGCAGCGCAATCTGGCGAGACACATTAGCAACTTGCACGGCAAAGACGTGGGACCTTTCATTTGCCCACAGTGGCGTATCCCTCCTCCCCAGCCGCCGCCGGTGTTCGGCGGAGTTCAGGAGACGTGGCCGTGTCCGTACTGCGTCAAAGTGTTCTCCACCAAACACAACCTGCTGCGGCACGAGAAGAACCTTCATGGGGAAGATGCGGTGCCCACGCGCTGCGAGTTCTGCTCCAGAGTCTACAAAAATAGGGACTCTTTGAGAACACACATATTCCAGAATCATAGAATGGGGAGGGAAATGATCACCATCAGTCCTGATCCTTATCATAGCAATAAGAGCAATCCATAG
- Protein Sequence
- MSDWTSSTLASSELMEFKPFACDLCSKTYSDSNHLARHKNNIHGRDAHPITCSATWGPETSHAEYNTRLLENRFCCKFCDKSYSANRLLVRHEKNIHGSECLVIRRVSRSSTTGTPPISPAPVDNQLRWQCTVCGNNYKSSFNLKVHMRNIHGPDSRPCTCPLCGCVYKNAHSLQCHVQARQGAWQLEPSCNLMSARSKERRHACEACGKAYNTVSNLNAHKRNIHGEFAQHTQCPICNGSETCLFSTGLGAATWLPPPAPQLVKAHTCAHCGKGYTEQRNLARHISNLHGKDVGPFICPQWRIPPPQPPPVFGGVQETWPCPYCVKVFSTKHNLLRHEKNLHGEDAVPTRCEFCSRVYKNRDSLRTHIFQNHRMGREMITISPDPYHSNKSNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01348331;
- 90% Identity
- iTF_01348331;
- 80% Identity
- iTF_01348331;