Salt022165.1
Basic Information
- Insect
- Siphlonurus alternatus
- Gene Symbol
- bab1
- Assembly
- GCA_949825025.1
- Location
- OX463787.1:1689192-1702592[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00078 2.4 8.5 0.0 4 39 395 430 394 435 0.87 2 2 0.00012 0.37 11.1 0.0 3 40 501 538 499 545 0.90
Sequence Information
- Coding Sequence
- ATGGTCACGCGCGTGAGCTGGTGCATCATCGTGCTGCAGCCGTGTGGCGGCATGATTGCTTGTGGGAGCAGAAAGCAGCAGCCGCTGCCGCCCGCCTCGCCCCCACAACACCGCCAGCGACCGCCAGCAGCAACACCACGAGGGCGGAGCCGAGGAGACCCGAGCGGCTCCGAGCGCAACCAGCAGCAGGAGCAGCGGAGCGGAGCAGCCAGCCGCGGAGCGGGCGGAGCCAGCGCGGAGCTGCGGCGACTAAAAATTCTCGAGATGGGTTCCTCATCACAGCAGTTCTGCGTACGGTGGAACAGTTACCAGTCAAATCTACAGAACGCCTTTCCTAAGCTTCTCgtcaatgaaaattttgttgatgTCACGCTCGCCTGTGAAGCTCAGATGATTAAGTGCCACAAGGTTGTTCTGTCGGCATGCAGTTCGTACTTCGAACAGCTGTTATCTCAGAACCCGTGCCAGCACCCAATCATCTTTATGAAGGACATGAAGTTCTGGGAAGTGCGAGCGCTCGTTGACTTCATGTACCGTGGGGAGGTGAACGTTACCCAGGAAGAGCTATCAAACCTTCTGAGGGCCGCAGAGGCGCTGCAGGTGCGAGGACTCTACGGGTACGAGCAACAGAGGGCAGCAGCTGCGGCCGCGGCGTGCGGGAAGACGTCTGGAGATCAGGCGGATGAGGGGAGGGGGAGAGTCACCCCCGCCCTGCCAGCAAACACCACTGTGCAGGAGTGCAAGTCCCAGTCCCGAGCAAGCACCCCAAACCAGGACGACAGCAACGACCAGATGGTGAAGCTGGAGGAGGAAATCATGATGATGGAGGAGCAGAGCATCTCGGATATGGACTCACACCTGGAAAACGACTTCCCCGCCATCGCCTCTTCCTCACAGGAGTTTGATGGATTTGTTGGTGACCAGAGATACCCTGCCCCTGCTTCGGTGGACCTTGACCAAGAGGCGGGTCCCTCGGGGCTCACTATGACCCCAAACTCCGCCCCCTCAACCCCCTCTGCAGACAGGAGCCTCGCTCAGGATGGTGCCACCAGCCCTCCGCTGCAGATGTTTCGCACTCCCGGCTGGAAACAGTCTCGTGCGCCTGTGGTAGCAGCCGCTAACAAGACCAACAACAGAGGACCTACCATCTGGGAGAGTCTACCCAAAGAGGACATGATGAAACAACTGACGCTAGCCGTAGAATTGATAGAAAAAGGGAACTCATATCGACGAGTCTCCAACTTACTTCATATCCCGAAAAGCACAATCTACTCCTACGTGATGAAAAGCCGTGAAGGAAAGGACTTGTTTCGTAGGAAAAGTCCGACTAGATCAGTTCTAGTAAAAAAGACACCAGCTCTTCTCaagacaaaattcaaatttgcaaAAGCAAAAGCAGggTCTCGGTTCTCACTGCCGTCGTGCCACATGGGTCAGGCGAGCTCGGGGGAGGAAGACATGGGCCCCAACTCTCCAATCAAACGCATCAGACGCTCCGAGAGGGAGCTCAGTGAGGCAGCCAACTGCATCAGTCGCGGACTTACCTTCCAATCAGTCTCAGACAGATACAAGATCCCGATTTCCACAATACGATTCTACATGGCGCGCCGTGGAATTCTTCCAAGACGTAAACGAGGACGCACCAACAGGTTTGACGAAATGCCGAAACAAGATCATCATCAGCAGAACGGTCCTCCCACCGTCTAG
- Protein Sequence
- MVTRVSWCIIVLQPCGGMIACGSRKQQPLPPASPPQHRQRPPAATPRGRSRGDPSGSERNQQQEQRSGAASRGAGGASAELRRLKILEMGSSSQQFCVRWNSYQSNLQNAFPKLLVNENFVDVTLACEAQMIKCHKVVLSACSSYFEQLLSQNPCQHPIIFMKDMKFWEVRALVDFMYRGEVNVTQEELSNLLRAAEALQVRGLYGYEQQRAAAAAAACGKTSGDQADEGRGRVTPALPANTTVQECKSQSRASTPNQDDSNDQMVKLEEEIMMMEEQSISDMDSHLENDFPAIASSSQEFDGFVGDQRYPAPASVDLDQEAGPSGLTMTPNSAPSTPSADRSLAQDGATSPPLQMFRTPGWKQSRAPVVAAANKTNNRGPTIWESLPKEDMMKQLTLAVELIEKGNSYRRVSNLLHIPKSTIYSYVMKSREGKDLFRRKSPTRSVLVKKTPALLKTKFKFAKAKAGSRFSLPSCHMGQASSGEEDMGPNSPIKRIRRSERELSEAANCISRGLTFQSVSDRYKIPISTIRFYMARRGILPRRKRGRTNRFDEMPKQDHHQQNGPPTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01348160;
- 90% Identity
- iTF_01348160;
- 80% Identity
- iTF_01348160;