Salt016241.1
Basic Information
- Insect
- Siphlonurus alternatus
- Gene Symbol
- -
- Assembly
- GCA_949825025.1
- Location
- OX463782.1:32570242-32575969[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.1e-06 0.019 15.3 0.0 2 38 153 188 152 192 0.89 2 4 2e-11 6.3e-08 32.8 0.0 1 38 202 238 202 242 0.95 3 4 0.076 2.4e+02 2.2 0.0 23 34 272 283 256 291 0.81 4 4 2.6e-12 8.2e-09 35.7 0.0 7 39 317 349 314 353 0.93
Sequence Information
- Coding Sequence
- ATGAGCTCCGAGCAGGAAGGTGACTTAAGCGGCGAGTCCAACTATCTCTTCTGGGGCAACCACGCAGTGGAAGTGGCTGGCACGCTGGCCTTGCTGCAGCAGTCAGGCTCCATGGTGGACGTCAAGCTGAAAACTGGCGGGGAGAGCATAGAGGTCCATCGCATGGTGCTGTGTGCAAGCAGTCCGTATCTTCAGATAAGCTCGCAGATCCCCCAGGTGGAGGAGGGAGAAGAAGTCATTCTCGGCAACACTGACGAGGAGCACACGGTGCTGTCGCTGCCCCTCTGGGAGTCCGACCTCGGCacggaggaggaggaggggggtgtGGTCGTCGCAGAGGAGGTTGTGCAGGACAAGCCAGCTGATGAGGTCAGCAGCATTTCGGATGAAGTTGTGACTCCAAAACCAAAGAAAAGACCTCGCAGAGATAATTCTAACAGAGAGAAAAAGTACAGTGAGGAGATGTTTGAAGAGGCACTCAAGGAGATGAAGGCTGGTCGCTCTCTTTGCGACACAGCCGCTGCTTTCAACATTCCCCGCACCACACTGTACATGAGGGCACGGTCCACTGGGGTCATCAGCATCGCACACAAGCTGGGCTACACCAAGGAGCAGCTCGAGGAGGCCATCAACGCAGTCAAAGAGGGCTCTAGCCTGCAGCAGGCCTCGAGCATGTACTGCATACCAAAGACGGTGCTCTGGCGTCGCGTGCAGGCATTCCGGACGACACCTCGCTTCCAGCAGACCTACAGTCCTGCGGAGAAACAGGCTGCTGTGGAGGCACTGGAGAGGGGGGAGCAGCTGCAGACCGTTGCCAGCCAGTTCCCGATCCCAAAGACAACGTTGTTCCGTGAAAAAGTGCGTCTGGTAGAGAGGGGTATTCTGCCGCTTGACAGCATCAAGAGGCGCAAGGGAGACACAGACTACTCTCGTTCAATGAGAGTTGAGCAGGCGGTCGCGGCTTGCAAGGAAGGCAAGATGTCCCAGTCGGCAGCAGCAGCTCACTTCCAGATACCCAAGACAACAATATGGCGGCGACTGCAGCACACTTGTGACAAGCCAGGCAAGCAAGACACAGACAAGGGGGACACGGAGGAGGCGGAAGAAGAGGAGCAAGAAGCGTACGAGGTGGACACCTCAAATCTCAAGTACGTGACTGAGGATGGGGAGTTTGCCACAGCCTCACTTATCATCCTCTCGTCAGTTGAGGGGGAGCACCTTCAAACTGGCAGCCAGCTCATCGTCAGCACGGAGGCTGATACAATGAATGAAGAAGAGAGTATGCAAGATGAAGAAGATCAGAGAAAGGAGTAA
- Protein Sequence
- MSSEQEGDLSGESNYLFWGNHAVEVAGTLALLQQSGSMVDVKLKTGGESIEVHRMVLCASSPYLQISSQIPQVEEGEEVILGNTDEEHTVLSLPLWESDLGTEEEEGGVVVAEEVVQDKPADEVSSISDEVVTPKPKKRPRRDNSNREKKYSEEMFEEALKEMKAGRSLCDTAAAFNIPRTTLYMRARSTGVISIAHKLGYTKEQLEEAINAVKEGSSLQQASSMYCIPKTVLWRRVQAFRTTPRFQQTYSPAEKQAAVEALERGEQLQTVASQFPIPKTTLFREKVRLVERGILPLDSIKRRKGDTDYSRSMRVEQAVAACKEGKMSQSAAAAHFQIPKTTIWRRLQHTCDKPGKQDTDKGDTEEAEEEEQEAYEVDTSNLKYVTEDGEFATASLIILSSVEGEHLQTGSQLIVSTEADTMNEEESMQDEEDQRKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01348271;
- 90% Identity
- iTF_01348271;
- 80% Identity
- iTF_01348271;