Salt017624.1
Basic Information
- Insect
- Siphlonurus alternatus
- Gene Symbol
- bab1
- Assembly
- GCA_949825025.1
- Location
- OX463783.1:14406879-14413612[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-10 4.2e-07 30.2 0.0 2 38 339 376 338 381 0.90 2 4 5.1e-08 0.00016 22.0 0.0 2 38 393 429 392 435 0.87 3 4 5.9e-17 1.8e-13 50.5 0.0 2 42 448 488 447 490 0.96 4 4 1.3e-18 4.2e-15 55.8 0.0 1 43 498 541 498 543 0.96
Sequence Information
- Coding Sequence
- ATGGCGTCTCCCAGTGGACTGCTGGGCCAGCACTACTGCCTGCGCTGGAACAACTACCAGTCGAACATGACCTCCGTGTTCCATCAACTGCTTCAAGACGAAGCCTTCGTGGACGTCACTCTTGCTTGTAACGAGGCCTCACTAAAAGCACATAAGGTGGTGCTATCTGCATGCTCGCCTTACTTCCAAAAACTGCTACTTGAAAACCCGTGCAAACATCCGGTCATCATTTTACCAACAGAAGTTAATTTTACTGATCTTCAATTCATCATAGAATTTGTTTACCGCGGAGAAATTGATGTAACTCAAGCAGAACTTCAGAGCCTGTTGAAGACTGCAGAACAATTGAAGATCAAAGGTCTTTGTGAGGTCGCAGCAAAGGAGATGTCAACGGAGCCTCGGAGAATGTACCCTAAAGTAAAATTCTCAACATTCAGCAACAAGCGAAAATGTTCAGGGGTTGATAGTGTACGTCGTACAATTCTACAAGAGTTTGGAGAAAGACATCATGGATTAGAGCAATTTGAATTTCCACCAAATGGAATGATGATTATGAAATCTGAAATTCCTACGCCAAGTCATCCAATCAGAGAAGTGCGTCCAGAGGAAATTATCGACATGGATATTTCAAACAACAGCTACTCAGAGAGACAACAGGCATCCCCTGAACCCGAAAACTTAGTACACAGGGAGAAGGAGATTCAGACGCTGGAAGAGACCACGGATGTCAATGCTAATTCATCAAAGCAACCAAAACTGCAAGAACCACAAGGAGGCGTGGCAGTGGTCCAACACCGTCTGCGGGATGTGATGGGAGTGAAAATCGAGATGAGAGGCGGAGAGGAGCACCCCTTGGACATGGCCCTCGAGTCTCGTCACAGTGAGAGGAGCTCTGCTGAAGAGGACCACACTATGATGATCACACCGGAGTTGCTTGGACTAATCCCAACCTCTGCCCTACACTCAGACGTGAGCTGCGACATGCCACTACACAAGACGACCAAACATTGGTCACAAGAAGACATGGATCTCGCCTTGGAGGCTCTCCGATCACAGAGCATGAACCTGACAAAGGCCTCCGCTACATTCGGTATCCCCTCCACCACATTATGGCAAAGAGCTCACCGACTTGGAATCAACACTCCGAAAAAAGACAGCCAAGCTAAGACATGGAGCGAATCAGATTTAAATCTTGCTTTAGATGAATTACGAGCAGGTCGTATCTCTGCAAATAGAGCATCAAAAACCTTCCACATTCCTAGTagcacattatataaaattgcacGTAAAGAAGGTATTAAATTATCAGCACCATTTAATGCTTCACCTACAACATGGAATAATGATGATTTAAATCGTGCATTGGATGCTATTAGAAACGGAGCATCAGTTCAGAAAGCTGCCTCAGAATATGGAATTCCTAGCGGAACATTATATGGAAGATGTAAGAGAGAAGGAATTGAGTTATGTAAAAATACTCCAGTTCCATGGTCTCCTACAGATATGAATGAAGCTTTGGAGTCTGTGAGAATGGGAGAGATGAGTATTAACCAAGCAGCAATTCACTATAACCTCCCTTACTCATCTCTATATGGTAGATTCAAACGTGTGAAATATGAAGCTACGGAAAATCATTCCAAGTTAGATTATGAGATGTACTCATGTTCTAGTGAGCCTGGGACTCATTGA
- Protein Sequence
- MASPSGLLGQHYCLRWNNYQSNMTSVFHQLLQDEAFVDVTLACNEASLKAHKVVLSACSPYFQKLLLENPCKHPVIILPTEVNFTDLQFIIEFVYRGEIDVTQAELQSLLKTAEQLKIKGLCEVAAKEMSTEPRRMYPKVKFSTFSNKRKCSGVDSVRRTILQEFGERHHGLEQFEFPPNGMMIMKSEIPTPSHPIREVRPEEIIDMDISNNSYSERQQASPEPENLVHREKEIQTLEETTDVNANSSKQPKLQEPQGGVAVVQHRLRDVMGVKIEMRGGEEHPLDMALESRHSERSSAEEDHTMMITPELLGLIPTSALHSDVSCDMPLHKTTKHWSQEDMDLALEALRSQSMNLTKASATFGIPSTTLWQRAHRLGINTPKKDSQAKTWSESDLNLALDELRAGRISANRASKTFHIPSSTLYKIARKEGIKLSAPFNASPTTWNNDDLNRALDAIRNGASVQKAASEYGIPSGTLYGRCKREGIELCKNTPVPWSPTDMNEALESVRMGEMSINQAAIHYNLPYSSLYGRFKRVKYEATENHSKLDYEMYSCSSEPGTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01348153;
- 90% Identity
- iTF_01348153;
- 80% Identity
- iTF_01348153;