Smay009644.1
Basic Information
- Insect
- Sipha maydis
- Gene Symbol
- stc
- Assembly
- GCA_034509805.1
- Location
- JASXSY010000571.1:307186-318251[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.76 3.2e+04 -3.7 1.6 15 19 150 154 149 154 0.81 2 16 0.059 2.5e+03 -0.2 0.4 4 10 182 188 181 188 0.95 3 16 4.1e-06 0.17 13.1 16.7 3 18 203 218 202 219 0.94 4 16 0.99 4.2e+04 -4.1 1.0 6 10 245 249 245 249 0.94 5 16 5.1e-07 0.022 16.0 12.0 1 19 255 273 255 273 0.92 6 16 0.37 1.5e+04 -2.7 0.3 5 10 275 280 275 281 0.83 7 16 6.2e-08 0.0026 18.9 17.1 1 19 313 331 303 331 0.90 8 16 0.38 1.6e+04 -2.8 0.6 5 10 362 367 362 367 0.89 9 16 2.6e-06 0.11 13.7 14.7 4 19 380 395 373 395 0.88 10 16 0.9 3.8e+04 -4.0 2.5 5 10 421 426 421 426 0.94 11 16 0.0023 97 4.3 6.3 1 11 432 442 432 443 0.94 12 16 0.029 1.2e+03 0.8 1.1 4 10 447 453 446 453 0.95 13 16 1.9e-08 0.00079 20.6 8.8 1 18 459 476 459 477 0.92 14 16 0.84 3.5e+04 -3.9 10.5 1 18 516 533 516 534 0.88 15 16 0.0034 1.4e+02 3.8 18.1 1 19 570 590 560 594 0.86 16 16 4.6e-05 1.9 9.8 13.9 1 18 600 618 600 619 0.89
Sequence Information
- Coding Sequence
- ATGCCCCGCACAAATAGTCGCAAAAGGAATATTTATCGTAATGATAATACAGCTAGAGTATCTACTGCTTCCAATTTATCACCTAATGCACCTGAATTTATCCCTAATGctaACAATGACAATGTTTCAAATTCAAGAGAATACTTGGAAATCCAACCTGTtcctttttttgaaaattccaATGTACCAAATAATAGTGGaaataatagTAAGTCTAATAGTATTGAAACTGCAATTCCTGAGTGTTCTATACCAGATGGTCAGAATGAGGGTCAAAGAGATGTACTTACCAACTTATTAAATGAGAGCAAAGTAGATTGTGTGATTTGTTATGAACGAGctaaaaatgttgaacaaattTGGAACTGTcgtaattgttttcaaattatgcatttgaaatGTATCATGGTTTGGTTCATTAAATCTCAATCGAATGGTACTTGGAGATGTCCAGCATGTCAAAGTGAAGTGACTGGAAAACcagattatttatgtttttgtggtactttaaaaaatccattttcaAACAATGTAGATATTCCACATTCTTGTGGTCAAATATgtggattacaaaaaaaaaatgccaatgtggaatataataattgtcatcATAAATGTACTTTGTTATGCCATCCAGGTCCATGTCCTCAATGCGTTGTCCAAGTCTTAAggAGATGCAGATGTGAAAAAACAGAAGTATATGTTCAATGTGGACAGTCTACTCCAATTTTGTGCCAAAATATATGCTCAAAACAACTTAACTGTAAAAATCATGTGTGTGAGAAACGTTGCCATGTTGGTGATTGTGAGCCATGTAAAAAGAACTGTCCTCAAATATGTTACTGTGGGAAATCACAACAACTAGTACCGTGCACAGCAGAAAATGCCATGGTGGTGTACTATGATTGTGGAAAATTATGTGGAAAAAAATTGTCTTGTAACAATCACACATGCAATAAAACATGTCACGTCGGTCCATGTGAACCATGTAAATCATTGGATATTGATAAATGTCCTTGTGGGAAACAGATTTTTGCACAAGAAGAACTTAAGAATCGTACATCATGTACACAGCCAATCCCTACATGTGGTCAATTATGTAAAAAGCCTCTTCAATGTGGTCCACCTGaaAATCCACATGTATGTGAAAAATATTGTCATGAAGGCCCATGTGGGCCTTGCAAGTTAAAAACCAAGTACACTTGTAAATGTGGTAGTAGATCAAAAGAAATAAAGTGTAGTTCTGTGACTAGTGAActaacttgtaaaaaaaaatgtaacaagatGATGTCTTGTGGTAAACATAGATGTATGGTAATGTGTTGTAATGCACAAGTGCATGAGTGTAATAGAATTTGCAATGGACTTTTAAATTGCCGTCAACATCGTTGTGAACGTGTTTGTCATACAGGAAGCTGTGCTGTGTGCTATGAAGCAAgtTTTGATGAGTTATATTGTCGATGTGGCAATAGTTTTATTCCTCCACCAATTAGATGTGGTACTCGCCTTCCTCTCTGTACATTGCCCTGTTCACGAGAACATGAATGTGGTCATCCTGCTACACATATTTGCCATGATGAAGAAGAATGTCCTCCTTGTATAGCTCTTactgaaaaattatgttttggtGGTCATGAGTTACGCTTTGCTATACCATgtcacataaaaaatgtttcatgtgGAATGCCATGTGGCAATCCACTGCCTTGCAATCGACATACCTGTGCCAAACCATGTCATTCACCACCTTGTAACACTGGACCTTGTAGATTACCTTGCAATTTACCCAAATCAGATTGTGGTCATCCATGTTTAATACCTTGTCATGATGGTCCATGTCCTCAAAGAGCATGTAAAACAATggtTAGTGTAAGTTGTATTTGTGGAAACTTGACTGAAACTAGGGTGTGTTCAGacactaaaattattgaatatcgtCTTAAGGTTAGAACACAATCAATAAGCCTCCTAGATAATATAGTTGACTTGTCACCAACTAATAagacatataaaatTTTGGAATGTACAACAGAATGTGCTAAATTAGAAAGAAACCGTCGTATAGCTCTTGCATTACAAATTCGCAATCCTGATTTATCACCTAATGTGACTCCTAGATATTCTGATTTTATGAAAGAATTTGCAAAAAAGGATGCTCCTTTCTGTAATTATATTCATGAAAAACTTGCTGAATTGGTTACTAATGCTAAACAAtcAAATAAAAGTTCTCGAAGTCATTCATTTgaagtaatgaaatttgaaaaacgGAAGTTAGTACATGAATATTGCGAACATTTTGGATGTGAATCTGCTGCTTATGATGCTGAACCTAATAGAAATGTTTTAGCTATAGCCAGCAAAGAaaagtCATGGCTTCCAAATTATAGTGTAGTAGAGGTTGTTCAACGTGAAAGTGGATGTCCAAGAGTGAATCCATTTGCAAGTATTCAGAAACGCAAtaccataattttaaacaaaaaattttaa
- Protein Sequence
- MPRTNSRKRNIYRNDNTARVSTASNLSPNAPEFIPNANNDNVSNSREYLEIQPVPFFENSNVPNNSGNNSKSNSIETAIPECSIPDGQNEGQRDVLTNLLNESKVDCVICYERAKNVEQIWNCRNCFQIMHLKCIMVWFIKSQSNGTWRCPACQSEVTGKPDYLCFCGTLKNPFSNNVDIPHSCGQICGLQKKNANVEYNNCHHKCTLLCHPGPCPQCVVQVLRRCRCEKTEVYVQCGQSTPILCQNICSKQLNCKNHVCEKRCHVGDCEPCKKNCPQICYCGKSQQLVPCTAENAMVVYYDCGKLCGKKLSCNNHTCNKTCHVGPCEPCKSLDIDKCPCGKQIFAQEELKNRTSCTQPIPTCGQLCKKPLQCGPPENPHVCEKYCHEGPCGPCKLKTKYTCKCGSRSKEIKCSSVTSELTCKKKCNKMMSCGKHRCMVMCCNAQVHECNRICNGLLNCRQHRCERVCHTGSCAVCYEASFDELYCRCGNSFIPPPIRCGTRLPLCTLPCSREHECGHPATHICHDEEECPPCIALTEKLCFGGHELRFAIPCHIKNVSCGMPCGNPLPCNRHTCAKPCHSPPCNTGPCRLPCNLPKSDCGHPCLIPCHDGPCPQRACKTMVSVSCICGNLTETRVCSDTKIIEYRLKVRTQSISLLDNIVDLSPTNKTYKILECTTECAKLERNRRIALALQIRNPDLSPNVTPRYSDFMKEFAKKDAPFCNYIHEKLAELVTNAKQSNKSSRSHSFEVMKFEKRKLVHEYCEHFGCESAAYDAEPNRNVLAIASKEKSWLPNYSVVEVVQRESGCPRVNPFASIQKRNTIILNKKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -