Smay010495.1
Basic Information
- Insect
- Sipha maydis
- Gene Symbol
- -
- Assembly
- GCA_034509805.1
- Location
- JASXSY010000620.1:118092-121098[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.38 71 5.3 0.3 1 23 171 195 171 195 0.91 2 14 6.6 1.2e+03 1.4 2.4 1 14 204 217 204 224 0.78 3 14 0.01 1.9 10.3 3.1 3 23 246 266 244 266 0.97 4 14 0.16 30 6.5 0.4 1 23 275 298 275 298 0.96 5 14 6.1 1.1e+03 1.6 1.3 1 23 386 410 386 410 0.89 6 14 0.067 12 7.7 0.4 1 23 417 440 417 440 0.87 7 14 0.00032 0.059 15.0 7.0 1 23 445 467 445 467 0.98 8 14 0.00022 0.04 15.5 0.1 1 23 471 493 471 493 0.97 9 14 0.00014 0.026 16.2 0.4 1 23 499 521 499 521 0.98 10 14 0.0016 0.3 12.8 2.1 1 23 527 549 527 549 0.99 11 14 3.4e-05 0.0064 18.1 0.3 1 23 555 577 555 577 0.98 12 14 0.0019 0.35 12.6 0.4 1 23 583 605 583 605 0.98 13 14 2.4e-07 4.5e-05 24.9 1.6 1 23 611 633 611 633 0.98 14 14 0.21 39 6.2 3.0 1 20 639 658 639 660 0.94
Sequence Information
- Coding Sequence
- ATGAAACACAGTTTCAATTTAGACTTAAATGCACTCTGTAGACTGTGTCTTAATAAAGGACCTGAACTTCGTCCAATCTTCGATTGTGATGTAAATTTCTCGTACCTTATCGAATCGTGTGTGGGACTAgaaTTACACCAATATGATCCGGGTCCATCACAAATGTGCATTGATTGTTTGACTCATTTGGAGAATTGGGAAgggtttaaagaaaaatgtatctcTGCTAATGAAAGCATTCAAGAATACCTGAAGCAGTTGGAAGAGGAGACATTAATTGAAACAGTGGACAAAATTGAGAAATTCGACAATCAATTAGAAGCTGATGAACACAATGATAATTATGACAGTACGATCAATAACGGATCAAACAATCAAGATTCTGATAATGATTCGTTAAAGTCTAAGTCGCCAATTTCAATAACAtctCGTGAAGTGTACCCAAGAGCAGTTAAACAAGATGGAATATCATCAGAAATGACCAATTTAACTAGAAACAGAAAAAAACGTTATGAATGTGGCTTGTGtccttttataaattttacccAAAAAGAATTTTTGTATAATCATCTAATTGATAGCCATAGTTTAGAAGAAAACAACATTCCACATTATTGTCTAATATGCAATAAAGGttattgtagttttaaaatataccaaGAGCATTTGACTGCTGAACAAGAACTACACGGGAGCCTTCAAATTCagGATAAAATCAAAGATTGCACATTTGGCTGCGGCTTGTGTAGCTGTAAATTCGGCCGATCAACCAGTCTTTACCGGCACCTCAGGAACCATGCATTGACAAAAGATCTCGTGCCGTATGTTTGTTCGTTCTGTCAAGTGGGATTTCTGGACAAGTATAGCCTTTACCTGCACGCGTCCACCGATCACAACGCCGCGTCCGTTGCCATCAACGAACCGGACCAGGAACGTGGTGACGGGCGACCACCGCCGGCGGACCGTTCGGACGCGGACGAACGTGCCGAGAACCGGGCCGCGGCGACCGTGACCGACGAGAACGCGGACGCGGAACCGGTGCGGGACGGCCGCAGGTACGCGATCACCACGAAGCGCAAGATCAAGAAGCTGCGGACGGTGGAGGACAAGCGGGCCAAGTACCGCGAGCACTACCGGCGGTTCCAGTCCAAGACGTACGCGTGCGAGTTCTGCGACGACGTGTCGTACTCGCGGTTCTGCGACCTGTCCAACCACGACCGGACCGCGCACGACGACATGGCCAAGGAGTTCAGCTGCCCGACGTGCGGCAAGCTGTTCCTGACGGACAGCCGGCTGCAGATCCACCGGGACGCGTTCCACGCGGAGAAGGCGTTCAGCTGCGACGTGTGCAACGTGCGGTGCAAGTCCAAGCACACGTTGCGCACGCACATGCGCAAGCACAGCGGCGTGTTCGCGTGCCCGTACTGCCACCTGACCACGGCCAGCAACGCGGCGCTGGTGTCGCACGTGCGCGTGCACACCGGCGAGAAGCCGTTCGTGTGCGACATGTGCGGCAACTCGTACGCGTCCAAGCTGGGCCTCACGTCGCACAAGCGCACCCACCAGCACGAGGCGCTGTTCAAGTGCAACGTGTGCGGTTACACCGGGTCCAGCCACAGCTCCATCTACATACACCGGCAGACGCACAACTCGGACAAGCCGTTCGTGTGCGACGTGTGCGGCAAGACGTTCAAGATCAAGGTGCGCCTGGTCGACCACCAGAAGATCCATTTCGCCGCCAAGAACTTCGTGTGCGAGGTGTGCAACAAGGCGTTCCTGGCCCGTTACCAGCTGGTGCAGCACTCGCGCACCCACTCGGGCGAGAAGCCGTTCTCCTGCCATCTGTGCGACAAGTCGTTCGCGCGGCGCGACGGCCTGTCCGAGCACATCAGGACGCACACGGGCGAGAAGCGGTACACGTGTCCCGAGTGCTTCGGCACGTTCTCGTTCTACAAGACCATGAAGAACCACAAGTGCGCCGTCGCGGGtaagcagcagcagcagcagcagcaacagcagcaacagcgCTTACCGGCCACACCTCCGAACAAACACCCGTCCGCCTCTCAGCCAACTCCGACGGCCGATAGCGCCCCCTCGGTGGCCGCGGACTGTTGTCCGTCGTACGCGGCGCTTCCGATCCTCGAGGTCGACCACGTGCCCTCCGCTTACCCCGCCGGTGGTCTACCAGTCTGGCAACCCAGTTAA
- Protein Sequence
- MKHSFNLDLNALCRLCLNKGPELRPIFDCDVNFSYLIESCVGLELHQYDPGPSQMCIDCLTHLENWEGFKEKCISANESIQEYLKQLEEETLIETVDKIEKFDNQLEADEHNDNYDSTINNGSNNQDSDNDSLKSKSPISITSREVYPRAVKQDGISSEMTNLTRNRKKRYECGLCPFINFTQKEFLYNHLIDSHSLEENNIPHYCLICNKGYCSFKIYQEHLTAEQELHGSLQIQDKIKDCTFGCGLCSCKFGRSTSLYRHLRNHALTKDLVPYVCSFCQVGFLDKYSLYLHASTDHNAASVAINEPDQERGDGRPPPADRSDADERAENRAAATVTDENADAEPVRDGRRYAITTKRKIKKLRTVEDKRAKYREHYRRFQSKTYACEFCDDVSYSRFCDLSNHDRTAHDDMAKEFSCPTCGKLFLTDSRLQIHRDAFHAEKAFSCDVCNVRCKSKHTLRTHMRKHSGVFACPYCHLTTASNAALVSHVRVHTGEKPFVCDMCGNSYASKLGLTSHKRTHQHEALFKCNVCGYTGSSHSSIYIHRQTHNSDKPFVCDVCGKTFKIKVRLVDHQKIHFAAKNFVCEVCNKAFLARYQLVQHSRTHSGEKPFSCHLCDKSFARRDGLSEHIRTHTGEKRYTCPECFGTFSFYKTMKNHKCAVAGKQQQQQQQQQQQRLPATPPNKHPSASQPTPTADSAPSVAADCCPSYAALPILEVDHVPSAYPAGGLPVWQPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01346649;
- 90% Identity
- -
- 80% Identity
- -