Basic Information

Insect: Sipha maydis
Gene Symbol: -
Assembly: GCA_034509805.1
Location: JASXSY010000696.1:58906-60916[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00061 0.11 14.1 3.5 3 23 159 179 158 179 0.98

2 10 0.0002 0.036 15.7 4.0 1 23 185 207 185 207 0.96

3 10 2.9e-05 0.0053 18.3 4.9 1 23 213 235 213 235 0.99

4 10 7e-06 0.0013 20.2 3.5 1 23 241 263 241 263 0.97

5 10 1.4e-05 0.0026 19.3 1.4 1 23 269 291 269 291 0.97

6 10 0.0003 0.056 15.1 0.1 1 23 297 319 297 319 0.98

7 10 0.071 13 7.6 0.1 3 21 326 344 325 345 0.93

8 10 0.00024 0.044 15.4 0.0 3 23 367 387 366 387 0.97

9 10 8.8e-05 0.016 16.8 2.2 1 21 437 457 437 458 0.93

10 10 2.3e-05 0.0042 18.6 3.5 1 23 469 491 469 491 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00061	0.11	14.1	3.5	3	23	159	179	158	179	0.98
2	10	0.0002	0.036	15.7	4.0	1	23	185	207	185	207	0.96
3	10	2.9e-05	0.0053	18.3	4.9	1	23	213	235	213	235	0.99
4	10	7e-06	0.0013	20.2	3.5	1	23	241	263	241	263	0.97
5	10	1.4e-05	0.0026	19.3	1.4	1	23	269	291	269	291	0.97
6	10	0.0003	0.056	15.1	0.1	1	23	297	319	297	319	0.98
7	10	0.071	13	7.6	0.1	3	21	326	344	325	345	0.93
8	10	0.00024	0.044	15.4	0.0	3	23	367	387	366	387	0.97
9	10	8.8e-05	0.016	16.8	2.2	1	21	437	457	437	458	0.93
10	10	2.3e-05	0.0042	18.6	3.5	1	23	469	491	469	491	0.97

Sequence Information

Coding Sequence: ATGGTGTACTTCGCGTTGTATAATGACAATCTTCAGCCAATAAGATTGGTAACAGACCATCTAACCGAGCGGCTGAATCTCGAGGGTGCATTAACGTTGCCGATTGCCAGCCCAAGTTCAGTGGATTTAGAACCCAAACCGGTGAAGCCAACCAAAAAGAACAGGCTGTCGACCGGATCACAGAATATTCGGCTTGCGGCCAAAAAAAATCACCAGAATGACGTGACAACGATGAGTAATAATCTCATGTTTCGAAGCATGTTTTTTATGAACGAAGAAGCTAGACATTTCTTGGCGCCGCCTATACAATTGTCTACAACTGATGGAGAATATTTCACTCGTAAGACTGGAAATCCAAATTTGAATACGCATCatcaacagcaacagcagcaggcAGTTGCAGCTCTTGCAAATCACGACTCGAGTTCTAGTGTTGAAAAACCTTtacaacCTCCTAAAGCTCGCCCTCACGGTTGTGAAGAGTGTGGAAAAACCTTTTTAATGAAACATCATTTGTCAACACATATGAGAGGTCATACTGGTGAGCGACCACATATTTGTCCTGAATGTGGTAAGACGTTTGCACTTAAACACTGTTTAAGCACACATTTGTTGTTGCACAGCTCTGAACGACCTTACAAATGTTTGGAGTGCAATAAAAGTTTTACCTTAAAACATCATTtggtAAGTCATGAAAGAGTACATACACGAGATAGACCATTCGAGTGTCCGGAATGTCGTCGTAGATTTCCCCAGAAACGCCACTTGACTACTCATATTAAATTCCATTCGGGAGAACGACCATATTCTTGTTCAGTTTGTGGTGAGACATTCTCACGTGAAGAACATCTAGTCATGCATTCTAGATTTCATGGAGGAACACAACCATTTGTGTGCCCAGATTGTGGAGCTGCATTCTTGCGTAAATTTGAATTGGTAAATCATGAACGACAACATGGTCGTATACCTGAATCTTGTCCTGCTTGTGGTAAAGAGTTCTTGCAGAGACGCACATTATTGGTTCATGTTAGAAACTGCGGCTTAAATTCATCAACACCAGTACATAGATCTCCTTATACTGCAACAGCAAGCAAAGCATGccgTGAATGTGGTGAAACATTTGCAAGTGATGAAGGTCTAGCACTTCATATGCGATTACACATTGGTGACCATAGTTTCCTGTCCGATATTTGTAGTCTAGCAGCTACTTTAAAACAAAGCGTACAGGGGGTATCAAATGGTATTGCTAATGTACAGAATCATCACCAAACACAACATCAAGCTGGTGCTGTAGCCAATAAGAAATCTCACTACTGCGGAGATTGTGGTCGTGGCTTTACCCAAAAACATGGTTTACAACAACATCACATCAAGTATCCAAATGCTACTTGTAAAGACAAGCCTTTTTCATGTCAAAAGTGTGGTAAAAgttttatgcaaaaaaatcaCCTTGTATTGCATGAAAGACAACATATGGATCCACCACCATCAAGAAATCGTAATCCTACAACCTCGGCTGTTCAATCTATACAACATTTACAGTCTGAACAGGTTAATCTGCAACCCACTCCTCTTCATGCGTCTATATTGGGACTTCAGCCTATTAGACATATTCAATCTTCTGGTAGTCAACCTCAACTTTTAAGACATCACCCAAGTGAGGCTCATTCAGGGTCTTAA
Protein Sequence: MVYFALYNDNLQPIRLVTDHLTERLNLEGALTLPIASPSSVDLEPKPVKPTKKNRLSTGSQNIRLAAKKNHQNDVTTMSNNLMFRSMFFMNEEARHFLAPPIQLSTTDGEYFTRKTGNPNLNTHHQQQQQQAVAALANHDSSSSVEKPLQPPKARPHGCEECGKTFLMKHHLSTHMRGHTGERPHICPECGKTFALKHCLSTHLLLHSSERPYKCLECNKSFTLKHHLVSHERVHTRDRPFECPECRRRFPQKRHLTTHIKFHSGERPYSCSVCGETFSREEHLVMHSRFHGGTQPFVCPDCGAAFLRKFELVNHERQHGRIPESCPACGKEFLQRRTLLVHVRNCGLNSSTPVHRSPYTATASKACRECGETFASDEGLALHMRLHIGDHSFLSDICSLAATLKQSVQGVSNGIANVQNHHQTQHQAGAVANKKSHYCGDCGRGFTQKHGLQQHHIKYPNATCKDKPFSCQKCGKSFMQKNHLVLHERQHMDPPPSRNRNPTTSAVQSIQHLQSEQVNLQPTPLHASILGLQPIRHIQSSGSQPQLLRHHPSEAHSGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01305888;
90% Identity: iTF_01305888;
80% Identity: -