Basic Information

Insect: Sipha maydis
Gene Symbol: -
Assembly: GCA_034509805.1
Location: JASXSY010001265.1:31739-39032[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00036 0.066 14.9 1.4 3 23 136 156 134 156 0.97

2 14 0.0014 0.25 13.0 0.2 1 21 212 232 212 233 0.93

3 14 0.00017 0.032 15.9 0.8 1 23 245 267 245 267 0.99

4 14 0.006 1.1 11.0 6.4 2 23 274 295 273 295 0.97

5 14 6.9e-05 0.013 17.1 0.2 1 23 301 323 301 323 0.98

6 14 1.4e-05 0.0027 19.3 1.4 2 23 330 351 329 351 0.97

7 14 0.00023 0.042 15.5 0.7 1 23 426 448 426 448 0.98

8 14 1.3e-06 0.00024 22.5 1.1 3 23 456 476 454 476 0.97

9 14 8.6e-05 0.016 16.8 0.1 2 23 505 526 504 526 0.96

10 14 1.8e-05 0.0033 19.0 0.3 1 20 547 566 547 568 0.95

11 14 5.3e-07 9.9e-05 23.8 0.4 2 23 579 600 579 600 0.98

12 14 7.8e-06 0.0014 20.1 0.5 1 23 606 628 606 628 0.98

13 14 2.4e-05 0.0044 18.6 0.7 1 23 667 689 667 689 0.98

14 14 1.4e-07 2.6e-05 25.6 5.2 1 23 695 718 695 718 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00036	0.066	14.9	1.4	3	23	136	156	134	156	0.97
2	14	0.0014	0.25	13.0	0.2	1	21	212	232	212	233	0.93
3	14	0.00017	0.032	15.9	0.8	1	23	245	267	245	267	0.99
4	14	0.006	1.1	11.0	6.4	2	23	274	295	273	295	0.97
5	14	6.9e-05	0.013	17.1	0.2	1	23	301	323	301	323	0.98
6	14	1.4e-05	0.0027	19.3	1.4	2	23	330	351	329	351	0.97
7	14	0.00023	0.042	15.5	0.7	1	23	426	448	426	448	0.98
8	14	1.3e-06	0.00024	22.5	1.1	3	23	456	476	454	476	0.97
9	14	8.6e-05	0.016	16.8	0.1	2	23	505	526	504	526	0.96
10	14	1.8e-05	0.0033	19.0	0.3	1	20	547	566	547	568	0.95
11	14	5.3e-07	9.9e-05	23.8	0.4	2	23	579	600	579	600	0.98
12	14	7.8e-06	0.0014	20.1	0.5	1	23	606	628	606	628	0.98
13	14	2.4e-05	0.0044	18.6	0.7	1	23	667	689	667	689	0.98
14	14	1.4e-07	2.6e-05	25.6	5.2	1	23	695	718	695	718	0.96

Sequence Information

Coding Sequence: ATGGACCAAGAACAACAGGGAGTTATTTACATTGAAAATTGGAATGACTTGTGTCGATTATGTTTACGCAATGATCAACCATtgcaaaatttgttttatgaagaATCCCTTTTGGAAAATGTCCAAGAAGTGACATGCTTAAGTttTAGTTTAGACGATGCTTTGCCCAATTCTATATGTAAATCTTGTATTGATCAAGTTAATTCGTATTTTGAATTTCGAGTACGGTGTAAAGCGACTGATCATTGGCTACGAAATGAAGCAGTGATTCAAGAAAACTATCATAagGATAATATCGAAATTGTAGAAGTAGTGGACATATGGAACGACGGTACTTCATTGGAAAAAAGAGAAAACACAATTTCTCAATTATGTGTAGAAAATACtgatgataaatattgtttgtgTGAAGATTGTGGGGAACGTTTTGAAACATCTAAATTGCTTGCTTTACATAATAAGACACATTCTTCAGATTATATTAAGTGCAAGTCATGTAATGGAGTTATTAGTGCCTTAGAGTCATTAGAACATTcattattgaaagaaaaaactaaGCTATGTATAaagtgtaaaaatttaaaaaacaatgattcaGAAGTTAACAGTTCTTATTCAGAAATTGATGGAGGATATTTGtgtgaaaaatgtcaaaaagtgTTTAAAACACTTGCTGGTATGTTATCTCATTTGAGAaattatgaaaagaaattaGAATTAGGTTCTCTTTCATATCGGTGTCATTTTTGTGAAGAAGCATTTGCAACTATTCAACAAGTCTGGATTCATATGAAAACTCATGCACCTGGAGAAAAGATTAAATGTCGACATtgtgaaaaatgtttcaaatctTACTTAACTCTTGTACGCCATGAGAATAAACATGAAGGTACCTTCAATTATGTATGTTCATATTGTGGAAGAGCTTTTGTTACACCATATGGTCGTGATAGACATGAAATGACTCATAATGCAGCTAAAGATGTGCAATGCGAAAAATGTACAATGACATTTTACACTAGAGCTGAGTATAACAGACACATGAGGTACCATGATAATAATTCAGTAATTGAACCAGAAGTAATGGAcgataaagatttattattagtGGAGCCAAATCAATACGAAGAAGAGCTCATTGATGATCCAGATTCTGTCGATGATCAACAAATAGTAGAAAATGAAGTTGAATTATCTCATTGCATTGTTCAAACAGAAGAAGTTATGCAAATTACGGCTAATGAAGATGAAACAATAGACACAAATACTAATGATCATCAATGTACAATTTGTGGTAAAGAACTGTTGTCTGCATATACACTTGCAAACCATATGCGTTCTCATACAGGAGAACGCCCTTATGGTTGTAGTGTATGTGAAAAATTCTTCAAAACAAAATCCAATTTAAATGAACATTACCGAGTTCATAACCCGGAACTGCGTTGGATGAAGACGTCCAGCAGAGACATCCCGTCCATTACGCGCGTGACGGTCACGTCGGAAGACATGCTGACGTGCGGCAGCTGTTCCAAGGTGTTCGTGTCGTTGGACGACCTGACGGCGCACGAACGCGTGCACGCCGGCCAACAGCAACGGGACCGGGAACGGGAACAGAACGGCGTCGCGGCGGTGCACGTGTTCACGTGCGAACGGTGCAACAAGAACTTCACTTCGAAGTCGCTGCTGTCCGCGCACATAGCCAACAACTGTTCGGACGCCGCGAACCGCGACCGGCAGTGCCCGTACTGCGGCAAGCAGTTCCGGTCCGCGGCCACGCTGGAGAACCACAAGCGGGTGCACACCAGGGAGAAGCCGTTCACGTGCGACCTGTGCGCCAAACCGTTCCGGACCAAAGGCAATCTGCTGGAGCACAAGCGCGTGCACAACAACAGCCTGTGGCTGATCAAGAACGATTCCAAGTTGACGGGGGACACGGCGgaggcggcggcagcggcggcggtcgGCTGTAGCGCCGGGGTGGCCGGCGGGGACAGGCGGTTCCAGTGCACGTACTGCGCGAAACCGTTCCGCACGTACACCGCGCTGCTGAACCACGAGCGCGTGCACACCCGCGAAAAGCCGTTCGAGTGTTCTGTGTGCGGCAAGTGTTTCCGCACCAAGTCCAACCTCACGGAGCACATGAAAGGCTGCCACGACATGGATTCGTCGGTGGCCGGAGGCTCGGACGAGGTGCAAGTGTTCACGTTCAAGACGCAATCGGTCAGCTGA
Protein Sequence: MDQEQQGVIYIENWNDLCRLCLRNDQPLQNLFYEESLLENVQEVTCLSFSLDDALPNSICKSCIDQVNSYFEFRVRCKATDHWLRNEAVIQENYHKDNIEIVEVVDIWNDGTSLEKRENTISQLCVENTDDKYCLCEDCGERFETSKLLALHNKTHSSDYIKCKSCNGVISALESLEHSLLKEKTKLCIKCKNLKNNDSEVNSSYSEIDGGYLCEKCQKVFKTLAGMLSHLRNYEKKLELGSLSYRCHFCEEAFATIQQVWIHMKTHAPGEKIKCRHCEKCFKSYLTLVRHENKHEGTFNYVCSYCGRAFVTPYGRDRHEMTHNAAKDVQCEKCTMTFYTRAEYNRHMRYHDNNSVIEPEVMDDKDLLLVEPNQYEEELIDDPDSVDDQQIVENEVELSHCIVQTEEVMQITANEDETIDTNTNDHQCTICGKELLSAYTLANHMRSHTGERPYGCSVCEKFFKTKSNLNEHYRVHNPELRWMKTSSRDIPSITRVTVTSEDMLTCGSCSKVFVSLDDLTAHERVHAGQQQRDREREQNGVAAVHVFTCERCNKNFTSKSLLSAHIANNCSDAANRDRQCPYCGKQFRSAATLENHKRVHTREKPFTCDLCAKPFRTKGNLLEHKRVHNNSLWLIKNDSKLTGDTAEAAAAAAVGCSAGVAGGDRRFQCTYCAKPFRTYTALLNHERVHTREKPFECSVCGKCFRTKSNLTEHMKGCHDMDSSVAGGSDEVQVFTFKTQSVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -