Smay034944.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sipha maydis
Gene Symbol
-
Assembly
GCA_034509805.1
Location
JASXSY010002774.1:66241-69963[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.0074 1.4 10.7 0.4 1 22 40 61 40 61 0.95
2 28 3.9e-06 0.00072 21.1 3.4 1 23 98 120 98 120 0.99
3 28 4e-05 0.0074 17.9 5.6 1 23 126 148 126 148 0.97
4 28 0.00031 0.057 15.1 5.2 1 23 154 176 154 176 0.99
5 28 2.4e-06 0.00044 21.7 1.2 1 23 182 204 182 204 0.99
6 28 1.8e-06 0.00033 22.1 3.0 1 23 210 232 210 232 0.99
7 28 5.5e-06 0.001 20.6 1.6 1 23 238 260 238 260 0.98
8 28 6.6e-07 0.00012 23.5 1.3 1 23 266 288 266 288 0.98
9 28 2.9e-06 0.00054 21.4 0.2 1 23 294 316 294 316 0.97
10 28 0.67 1.2e+02 4.6 6.2 3 23 437 459 435 459 0.82
11 28 2.2e-05 0.0041 18.7 1.9 1 23 465 487 465 487 0.99
12 28 7.4e-07 0.00014 23.3 0.7 1 23 493 515 493 515 0.99
13 28 1.3e-06 0.00024 22.5 3.6 1 23 521 543 521 543 0.99
14 28 0.0012 0.22 13.2 1.6 1 23 549 571 549 571 0.94
15 28 1e-05 0.0019 19.8 0.2 1 23 577 599 577 599 0.97
16 28 0.00059 0.11 14.2 2.1 1 23 625 647 625 647 0.97
17 28 2.4e-05 0.0045 18.6 1.6 1 23 653 675 653 675 0.98
18 28 5.9e-05 0.011 17.3 0.6 1 23 681 703 681 703 0.99
19 28 8.5e-07 0.00016 23.1 0.6 1 23 709 731 709 731 0.99
20 28 0.001 0.19 13.4 1.4 1 23 844 867 844 867 0.98
21 28 4.4e-05 0.0082 17.7 1.9 2 23 902 923 901 923 0.97
22 28 4.2e-05 0.0079 17.8 4.6 1 23 929 951 929 951 0.98
23 28 7.6e-05 0.014 17.0 1.2 1 23 957 979 957 979 0.98
24 28 0.0023 0.42 12.4 1.2 1 23 985 1008 985 1008 0.98
25 28 0.00041 0.075 14.7 4.0 1 23 1014 1036 1014 1036 0.98
26 28 0.00083 0.15 13.7 3.8 1 23 1042 1064 1042 1065 0.95
27 28 2e-06 0.00037 22.0 0.7 3 23 1100 1120 1098 1120 0.98
28 28 7.6e-06 0.0014 20.1 0.9 1 23 1126 1148 1126 1149 0.94

Sequence Information

Coding Sequence
ATGACCGGACACTTTGAAGAAACATCAATGGTTGATGATGAATCCTTTCAAAATCCAAGTGAATCCATGCTTTTTGAAATGGTCGAAGGCAATGAAAACAGTATTCTTCCAAAAGAATATATATGCAATatgtgtaaaattgtatactacaAACGTTCACAAATAATAAGACATTTAAAACGGTCTTGTTTTGAGAGAACAAATCTTACAGTTACTGATAACGTAGttcctaatattaaaaaattacccgGCTTATCCAAAAACAAACAATCGTATTTTCAGTATAAACTTTACCAGTGCGAATTTTGTTCAAAATCTTTTCCGAATAAGACTAAATTAACTCAACACACTCGGACTCATAGTGCGAAAAAATCATTTTGTTGCGAAATTTGCCATAGAGTGTTCTCTAATTCTTATAGTTTGAAAAGTCATGGAAAAACTCATTCCGGGGAAAAGCCATATACTTGTGATATCTGTCAAAAATCTTTTGCTCATTcacatattttaacaaatcataAAAGAACCCATTCCGGagaaaaaccatttaaatgtGAATTTTGTCAAAAATCTTTTGCTACGTCTGGAACGTTAGTAGCACATAAACGTACACACACAGGTGAACAGCCGTATAAATGCAATATATGTCAAAAGACATTTTCTTTATCCAGCAGTTTGAGTTCACATAAAAGAACACATACTGGTGACAGACCtcacaaatgtaatttttgtccAAAAGCATTTGCCAAAAGTGGTGACTTGGAGAGACATAAACGAATCCACACTGGTGTTAAACCATTTCATTGTGATATCTGCGATAAGTCTTTTACACAGTCATCTGGCTTGATAATACACAAAAGAATCCACACCGGAGAAAGGCCATTCGCGTGTGATTGGTGTGAACGATCATTTACTAATTCGGCCAGTTTGATAGCGCACAAGCGAACCCATACAGGAGAAATACCTCATATGCCACTACATGTCCTCAACGCACAGCAGGTGTCAAATAGTCAAAATACTAcggaaaaaaatggtttttcagAAGTACCGACATCGTCAACCACAGGTTTATGGGACACCAGTGTCCCTACCCCGTCTATCGGAGATTTGAGTTATAACTGGTCTAATTATTGGTTTCAAGGCGAAGCGGATCCTAGTAGCGTTAAAAATCCAATTCATAGTACTGGTGAACAACCCGCGTACAACGATAGAGAAAATATGAATGGCGCGAGCTTAGTAAACGGAGTTAGTACGACGACTTCGATAGAAAACGCAACACCCATTAAAAGACCGGAAGGTCGGTGGTTGGATTGTGACGTTTGCCATAAGACATTTCCGTATTCGTCCAGGCATAAATTAATCGAACACCAACGGACTCACACGCGTGAAAAACCGTTTAAGTGTCTTCAGTGTCAAAAATCGTTCTCATTATCCAGTACTTTGATTGTACACAAAAGAATGCACACCGGAGAAAGACCGTTCAAATGCGATATGTGCCCGAAAGCGTTTGCTCAAAAATCAAAGTTAAACATACATAAACGGGTCCACACGGGGGCGAAGCCGTTTCGTTGCGACTATTGTCAAAAAAGTTTTGCTCACTCGTCGAATCTGGCGGATCACAAGAAAACGCACACCGATGAGAAACCGTACGAGTGCGATATCTGCCACAAGCTGTTTACGCTCGCCAACAGTTTACGGAAACATAAAGTGTTGCACACCGGATACAAACCGTATGTGTGCAACGTTTGTGGAAAAGCGTTCGCGAAAAAGGCCAGTTTGGACCGTCACAAAGGTACGCACGACGGTGTGCCCGAATGGACCAAACCGTTTGCGCACGCCTCGAGGGAAAATCGAACGGACACCGGTGACAAGCCGTTCAAATGTCACGTTTGTTTCAAATCGTTCGCCAGCCTAAACGGGATGACCAGACACGCGGCCAAACACAACGGACAAAATCGATTTCAGTGCGAAGTGTGCCATAAGAGTTTCACCGGGCTGTCGGTGCTGGTCAGGCACAAACGAATACACACGGGAGAAAAACCGTTCCAGTGCGACTATTGTCCCAAGGCGTTCGCTTACTCGTCGATACTCGTAACTCACAAACGCACTCACACCGGTGAGAAACCGTACCGTTGCGATCTATGCCCCAAAGCGTACACGCAGTCGTCCAGTTTGATCGTGCACAAACGAACCCATTGGGACGAACAGCGGACGATCGATGGAAACGGACGACGGCCACCGCCGATGCAGCAGCCGGCGGACGAGCCGAGGACCACTGAATACGAGTTACCACCGAACGCACCGGTGGCCGACGACTACGCCGACAATTGGTCCGGTTGGTATCCCGCGGAACCCGACATGTCCCTTGTCGCCAGCGAACTGCCCCACCAAATCGCACAGAACCCCGCCATCGAGGAGGACCCTTCGTCGCGAGTCGGAGGAGTGGTGGTGCACAGCGGTGCGTCCGACCGCCGAGTCGTCGCTGGCGCGCGGCACGACCCGACAATAGACGTGGCGGCCATGCCGCAAAGGTTCAAGTGCGCCAAGTGCAAGGACACGTTCGACGAGAGCTCGCTGCTGCTGAAACACATTAGAAAGACGCACCGGGCCAACGCGAACAAGCCGAGAACCGGACCGGTGCGCGGCGGTGCGGCAAACGACGGGGCGGCGAAACGCAAGAAGAAACGCGGCGAACGTCAGCGCCTGGAGTGCGACATCTGTCAAAGGCCGTTCCACGACTCGTACAAGCTGAAGGTGCACCGACGGACGCACACGCGAGAGAAACCGTTCAAGTGCGACGCGTGCGACAAGTGTTTCATCGACTCGTGCAATCTGAAGGAACACCAGAAGGTGCACACGGGTGAGAAGCTTTTCGAGTGCGACATATGCCAGAAGACGTTCTTGCAGCTGGGCACGTTGACCACGCACAGGCGCACGCACACCGGCGAAAAACCGTACAGCTGCGACGTATGTCACATGCCGTTCGCCCTGTTGAGCAGCATGAAGACGCACAAGCGGCGCGCGCACACCGGCGAGAAGCCGCACAGGTGCGATTTCTGTCAGAAAGCGTTCGTCAAGCGCAACGACATGGTCCGTCACCGGCGCACGCACACCGGCGAACGTCCTTTCGTGTGCGACGTGTGCCACCAGTCGTTCACGCAGTCGTACGTTCTGGTGTTGCACAAGAGGAACCACCATGCGGACGGTAAAGCTTTCGCGGGCGACCGCGCCGGAGGGCCGCCGATCGTGGCCGCAGCGAAGCACGCCGGCGGCGCGGTGCCCAAAGAAAAACCGTTCGGATGCGACGTTTGCCCGAAATCGTTCGCCAGCCAGTCCACGTTGAACACGCACAAGCGAACGCATACCGGCGAGAAGCCGTTCCGGTGCGACGTGTGCCAGAAAACGTTCACTCAATCGTCCGGTCTGATCGCTCACAAAGCCGCGCATCACCATCGCCCCGCGGTCCAATCGTTCGAACGGCATGACGTCacgcaacaacaacaacaacaacaacaacaacaccaCCACCACCAGCAGCAGCTGTACATAGGCACCACCAACGTGTACGCCGCCCCTTTGCACAGGGCATCCCACCAGTACACCGGGGACAGAGCCTGCGGATGTGGCATTTGTCAATCGTCCACTTTTAGCCAACCACTCCCTTTTGATTCAGTGCACTTCGATCAGCCCATGATACCACACGACAGGAACATGTATTACgcataa
Protein Sequence
MTGHFEETSMVDDESFQNPSESMLFEMVEGNENSILPKEYICNMCKIVYYKRSQIIRHLKRSCFERTNLTVTDNVVPNIKKLPGLSKNKQSYFQYKLYQCEFCSKSFPNKTKLTQHTRTHSAKKSFCCEICHRVFSNSYSLKSHGKTHSGEKPYTCDICQKSFAHSHILTNHKRTHSGEKPFKCEFCQKSFATSGTLVAHKRTHTGEQPYKCNICQKTFSLSSSLSSHKRTHTGDRPHKCNFCPKAFAKSGDLERHKRIHTGVKPFHCDICDKSFTQSSGLIIHKRIHTGERPFACDWCERSFTNSASLIAHKRTHTGEIPHMPLHVLNAQQVSNSQNTTEKNGFSEVPTSSTTGLWDTSVPTPSIGDLSYNWSNYWFQGEADPSSVKNPIHSTGEQPAYNDRENMNGASLVNGVSTTTSIENATPIKRPEGRWLDCDVCHKTFPYSSRHKLIEHQRTHTREKPFKCLQCQKSFSLSSTLIVHKRMHTGERPFKCDMCPKAFAQKSKLNIHKRVHTGAKPFRCDYCQKSFAHSSNLADHKKTHTDEKPYECDICHKLFTLANSLRKHKVLHTGYKPYVCNVCGKAFAKKASLDRHKGTHDGVPEWTKPFAHASRENRTDTGDKPFKCHVCFKSFASLNGMTRHAAKHNGQNRFQCEVCHKSFTGLSVLVRHKRIHTGEKPFQCDYCPKAFAYSSILVTHKRTHTGEKPYRCDLCPKAYTQSSSLIVHKRTHWDEQRTIDGNGRRPPPMQQPADEPRTTEYELPPNAPVADDYADNWSGWYPAEPDMSLVASELPHQIAQNPAIEEDPSSRVGGVVVHSGASDRRVVAGARHDPTIDVAAMPQRFKCAKCKDTFDESSLLLKHIRKTHRANANKPRTGPVRGGAANDGAAKRKKKRGERQRLECDICQRPFHDSYKLKVHRRTHTREKPFKCDACDKCFIDSCNLKEHQKVHTGEKLFECDICQKTFLQLGTLTTHRRTHTGEKPYSCDVCHMPFALLSSMKTHKRRAHTGEKPHRCDFCQKAFVKRNDMVRHRRTHTGERPFVCDVCHQSFTQSYVLVLHKRNHHADGKAFAGDRAGGPPIVAAAKHAGGAVPKEKPFGCDVCPKSFASQSTLNTHKRTHTGEKPFRCDVCQKTFTQSSGLIAHKAAHHHRPAVQSFERHDVTQQQQQQQQQHHHHQQQLYIGTTNVYAAPLHRASHQYTGDRACGCGICQSSTFSQPLPFDSVHFDQPMIPHDRNMYYA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-