Smay001772.1
Basic Information
- Insect
- Sipha maydis
- Gene Symbol
- clz9
- Assembly
- GCA_034509805.1
- Location
- JASXSY010000088.1:53323-64617[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-08 9.7e-06 26.4 0.0 1 39 20 58 20 61 0.91 2 2 8.1 7.5e+03 -2.0 0.0 30 43 693 706 693 707 0.82
Sequence Information
- Coding Sequence
- AtgaatagaaacaaaaaaaatacaactgcaCAAACAAAAAGGaagttatttcaatattctCCAACAAAGCTCAAACAGGCATTGGATGCTATTCGAAGTGAGTCATTGAATGTTTTGCAGGCTACAAAACGTTATAATGTGCCAAGATCTACTCTAAGAAATAAGCTTAGTGGCAAGTCAGAGGATGATTCTCGTCATGTTGGGCCTAAAGCAGTGTTGGGTGcatcagttgaaaaaaatctggTAGATTGGATCTTTGGAGTTGCAAAAATGGGCTtccctataaataaaaatatattaattgatactGTCCAAAAAATAGTAAGTTTGGCCACTGATGTAAGCACACCATTTATTGATGGTAGACCAGGTCGACGGTGGTTTGAGGGTTTTATGAGACGCCATCCAGAAGTAAGTCAAAAACAATCCGAATATATTAACAAAGCAAGAGGCCAAATAACTGAGGGAAAAATCAGGGGATGGTTTAAAGAAACAGAAGAACTTTTAGAGgaaaatattgatgttttaCAAGACCCAACTAGAATTTTTAATATGGATGAAACTTCATTTTATCTTTATCCTAAAGGGTATCTTGTTTTGGCTGAAAAAGGTAGTCATGTGTATGATACTTCAGCCAAATcggataaagaaaatataacaacATTAATAACTGTTAGTGCTGATGGTGTAATAGCTCCCCCTTTgactgtgtataaatataaacgtatgAACCAAGAAATAGCTCGAACTGCTCCTAGCTACTGGGGTCTTGGTAAAACTGACAGTGGGTGGATGACAGGTGAagctttttatgaatatttcacCAATGTATTTTATCCATATTTAATCAGCAGTAAAATTAAACTTCCCGTGATCGTTTTCTTAGATGGCCATTCATCCCATTTAACGATGCATTTAGGTATGTTTTGCAAAGAACACCAAATCATTTTGGTATGTTTATTTCCAAACACCACACACATCCTCCAACCACTTGATGTTTCAGTTTTTGCTCCATTAAAAGCCAAGTGGAAATCTACAGTGCGCCAATGGAGAGTTGATAATGATGGTaaagaaatatgtaaacaaGATGTCCCTACAGTATTAcacacaattttgaaaaatagcaACTTTACCAACTCTATTAAGTCTGGTTTTAGAGTTTGTGGACTTTTTCCATGGAATGCAGATAATGTAGATTATTCCAAGTATACTTTAAAAGAATGTCCAACTAATACTTCTACACAAAAATCTGAatcaactaatttattataccttaaaaattttgaaaaatatattcagcCCGATCTTCTTAAAGAGTTTTATTTGACTAAAGATAGACACACTGATTGGGAAGGTTCTATGACTGCTTCAGATTTATATGATGTATGGgataaaatgttgtttgatcagaatcaaaatatattacaacctTCTATTAGTTGTGAGGCAAACGAATTGCAAACAATTAACACTCCAAATGATTCTACCGGCCAACCACAAACAAaagaattaaacaatataagcCCTAACTCTAATTTCAATGACACAACTGTAAGTTCAAATATCTCCACACCTAATTCATCAAATAAGTCATTTGAGGATGTTATGGCTGATGTTATTAAGTGGCCAGAGCCAGTACCAAATAATACCAGGAAATATTGTAGAGTAAAGTTGCCAACAGTTGTAACATCACAAAAGTGGTTAGATATTAAAAGTGCTCAAGATGAAGAAAAGAGTAAGAAATGTGTTAAAAGAGTGAAAACAGTTGTggaaaaatcaaagaaaaatgaaaaagACAAGATAGGCTCAAATAACGAAATAGGTTTTCGCTGGGTACAGATCGGAGGAGTGACAATATACGCCTGTTACTGGTCACCCAATACCGAATTCACCCAATTTATCGACTTCCTCGACAGACTAGAGGCTAGCATTAGAACAACAAATGGCACAGTCATAGTCGCTGGAGACTTTAATGCTAAATCACCGGAGTGGGGCGATCATCGCGAAGACGCGAAGGGACGAGCTCTGACGGACTGGGCAGCCAGTCTAAGCCTCGTTCCATGCAATCGCGGTGATAAGCCGACATTTTCCAGAGTCTACAATGGTGGCATATCAAGGTCACACATCGACATCACATTCGTAACTGAAAGCAGAGTACAACAAGTACGTGAATGGAAGGTCTTGGACGAGTACACCGGATCACTTCACAGATATATATCCTACGAAATATCGGCATCGGCCAAAGAGCCAAGTCAACAAGACACCATTGCTACATGGTCATGGAGAAAGTATGACCACACTAAATTACAGAGCTTCCTATCCGGGTCGAACTTCAAAATAGTCGGACCTACAGCATTATTGAGTGCGAAAGAAGTAGGAATATACCTAGAAGAGGCATGCAACAGCTGTATGCCGCGAGGAGAGTACAAAGGAAGAAAGAAACCTACTTTTTGGTGGTCGCAAGAAATCGCTGATCTCAGGAAGGACTGTTTAAAAGCAAGgagaaaatacaagagaagccaatatcgccagaataatacgcaagaatcagactacgtcaactacaaggagacaaaaaagagactaaagaaaactatcaggaaaagcaaagaagctggctggaagaatctatgcgcacaagtagaaacggatccctggggcctgccttacaagAAAAAGCGCATGAGTGTAAACATACCTATAGAGAGCGCTAAAGGTACGGTGTCCAATGCGCGACTTGTCGCCGCGACCGGTCGCCGCGACAGGTCGTGCTCGGCCGATTATTCGCGTTTCCCATTGACTGGTGTCCTACCCGCGACTGCAACGCGCGACAGATAA
- Protein Sequence
- MNRNKKNTTAQTKRKLFQYSPTKLKQALDAIRSESLNVLQATKRYNVPRSTLRNKLSGKSEDDSRHVGPKAVLGASVEKNLVDWIFGVAKMGFPINKNILIDTVQKIVSLATDVSTPFIDGRPGRRWFEGFMRRHPEVSQKQSEYINKARGQITEGKIRGWFKETEELLEENIDVLQDPTRIFNMDETSFYLYPKGYLVLAEKGSHVYDTSAKSDKENITTLITVSADGVIAPPLTVYKYKRMNQEIARTAPSYWGLGKTDSGWMTGEAFYEYFTNVFYPYLISSKIKLPVIVFLDGHSSHLTMHLGMFCKEHQIILVCLFPNTTHILQPLDVSVFAPLKAKWKSTVRQWRVDNDGKEICKQDVPTVLHTILKNSNFTNSIKSGFRVCGLFPWNADNVDYSKYTLKECPTNTSTQKSESTNLLYLKNFEKYIQPDLLKEFYLTKDRHTDWEGSMTASDLYDVWDKMLFDQNQNILQPSISCEANELQTINTPNDSTGQPQTKELNNISPNSNFNDTTVSSNISTPNSSNKSFEDVMADVIKWPEPVPNNTRKYCRVKLPTVVTSQKWLDIKSAQDEEKSKKCVKRVKTVVEKSKKNEKDKIGSNNEIGFRWVQIGGVTIYACYWSPNTEFTQFIDFLDRLEASIRTTNGTVIVAGDFNAKSPEWGDHREDAKGRALTDWAASLSLVPCNRGDKPTFSRVYNGGISRSHIDITFVTESRVQQVREWKVLDEYTGSLHRYISYEISASAKEPSQQDTIATWSWRKYDHTKLQSFLSGSNFKIVGPTALLSAKEVGIYLEEACNSCMPRGEYKGRKKPTFWWSQEIADLRKDCLKARRKYKRSQYRQNNTQESDYVNYKETKKRLKKTIRKSKEAGWKNLCAQVETDPWGLPYKKKRMSVNIPIESAKGTVSNARLVAATGRRDRSCSADYSRFPLTGVLPATATRDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -