Basic Information

Insect: Sipha flava
Gene Symbol: -
Assembly: GCA_003268045.1
Location: NW:1070702-1075849[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.2 17 5.6 0.7 1 23 801 823 801 823 0.90

2 9 0.0045 0.4 10.8 0.4 1 23 829 852 829 852 0.97

3 9 0.1 9.1 6.5 2.3 1 19 858 876 858 878 0.96

4 9 0.013 1.1 9.4 1.1 3 23 890 911 889 911 0.92

5 9 0.012 1 9.5 4.8 1 23 919 942 919 942 0.96

6 9 2.1e-05 0.0018 18.1 2.5 1 23 1174 1197 1174 1197 0.97

7 9 7.7e-06 0.00068 19.5 1.2 1 23 1203 1225 1203 1225 0.96

8 9 0.0027 0.24 11.5 0.2 1 19 1231 1249 1231 1249 0.99

9 9 0.001 0.088 12.8 0.3 2 23 1258 1279 1257 1279 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.2	17	5.6	0.7	1	23	801	823	801	823	0.90
2	9	0.0045	0.4	10.8	0.4	1	23	829	852	829	852	0.97
3	9	0.1	9.1	6.5	2.3	1	19	858	876	858	878	0.96
4	9	0.013	1.1	9.4	1.1	3	23	890	911	889	911	0.92
5	9	0.012	1	9.5	4.8	1	23	919	942	919	942	0.96
6	9	2.1e-05	0.0018	18.1	2.5	1	23	1174	1197	1174	1197	0.97
7	9	7.7e-06	0.00068	19.5	1.2	1	23	1203	1225	1203	1225	0.96
8	9	0.0027	0.24	11.5	0.2	1	19	1231	1249	1231	1249	0.99
9	9	0.001	0.088	12.8	0.3	2	23	1258	1279	1257	1279	0.97

Sequence Information

Coding Sequence: atggataaatataataataataagacgaaaaaaatgattgaatttaATGAGAAACCTATGCAACTAGTAAATGGAAgattattgcattataaaaatcatcattataatGAACAGATTCTCAACAAGAGTACATCAACAACTAATGTTAAAGACCCTACAATTCTTAATTGTATGCATACTTATGCAatttatcatgaaaaaaaaatacctgaaAGTCAAGTAAATTTTGAAGATAGTGACAATGTAAAGGTACAACAAATGACCAACCAAAACCTCCAGTATCAAAGTTTTTTCAGTAGTGATGGATTAATAGTAACACCAATTCCGCTTACCAAAACTTCTCTTTTGTCTCCTTTGGTGAAAAACCCAAAAAGTTCTTCTATGATTAAGGATTGTAATGTAGGAATTCCAGTCCAACTAGATTCCCAAGTAAAGTCAAATATCAATAACGATATTTCTGAGTCTGCTATACCATTAGATTATTCTAAAAAACATTCTTGGATCAAATgcgagaataaaaataattgttgtacaaACAACAcagatttaaataacaaattattaaatctctCAGTTGAAAATGGTGGAtctcttataattaataaattaacttctgataaatcaaaaaaattccaaaattgtCTTCCAATTAAAGATAGAAGTTATGTGGTGTTAAAAATGGATGTTGATAAAGCAAATATAACTGGTGATAATTCAAGACAAAACAGTTTCAATAAAGAATACAGTAATAAGGGTTCTTTGATCAGACCTACAGTGGATGAATCTAAAACTCATCtttgcaataaaaaatcaaCCGAAAATTTGAAGACTTCTTCAATGGGACAAACATCTGAAGATGAATTAGttgtattaaatgattattcaattatacaaacaaattatgcAAAAGAACAAGCTAGTAGTAATTTTAAGCCAAAAATGgttgtaaataaatcatataaaaatggtggtttttcaaataaaaacaatttcagtaaaatatcGAGTGTTAAGTGTAATACCAAATGTGATGATGGAACTAGATACCAATGTGTTTCAAGAAATCAACATTGCAGcaacacaaaacaaaataattttaagaatagaaTTTCAACTTTATGGGAAATGGAAGATGGATGTATTAGAACTGATATTTCGTCTAGTTTTTCTAAAGGATTAAATAATGTCAGTAATGGTCCATTTAAACATAAAGATAAATGCAAAGAACAAGATAATACTAAAAAGGACTGTCACagtaaaattaatctaatcCCACAATTGGGCATAAATAGTTCTAATACTGTGGTTAATATTAGTAGtttcttagaaaaaaacaagttaaataaaattcaaaattataattctgaaCAAGTTTCAATGACACAAAAGGCTGCaaacagaattgaaaaaaacaCACCATCTACAGGAGGCTGTATTATGAAGCTAAAACCTTCCAAAATAAGTAATTCAGTGATGCAAAGTGTTACAACTGTGTACACCAATGACATATCCGATTTGAATATAAACTCAACTTGTATACAAAATAGTACTCCAGAGAATTACAAGTTTACATCCTTAgaacaaaattgtaatattcAGAATCTtccaataattgtaattgatgATTCCTCAGATTCATATGAAAATTCAAGTAATATTGAAAAAGGATTGCAAAATAAGTCCATCAATATACCAATTGAGAGCAGATGTAATATAAAACAgagtttttatgataaaaataagtcaGCGTTACAGTTGGCCACAGCTGGTTTTTCTGGGAAAAACAAAGTTAATAAAGAACcagtaaattttcaaaaaattcctTTAATCAGTCAGAATAACGTACCTGAAAAGTTGGATGATGATGATACAAAgcaaaataaatccaataaagaaattacaatattaaaaaagactGAATTTAACGAATTCATTATGAACAAAAATTCTTTCAAGCCCACTGAAAAATTAACCAAggtcaaaaatagtattttatctgGACAACataaccaacaaaaaaaattattttatgaagccAAGTTGAAAGAATGTACTGTAAGTAATTCAGATGcaagaataataacaaataatttaattcaagtcCGTGATGTAACAAAATCTGATGAAATTCCAACTAGTATTGAAAAAAGCATTCAGATAAAAGATGATGgtctattaaaaaatcaaaaagaaatttTACCAACAAGATGTGTTGATAGAATTCGATTTTCACAAATATGCAGTAGAAGATCTATTTTTCGACCAACATTTAAGACAAAATACACTTCtaataaaatcatgaaaaaagaaaataccagAAGAAAATGTAATCTTTGTGGTAGGCTAATAAAGTGTAATAGTTGGTTAACGCATTTACAGGGAATACATAacttatatcaatatttctGTAATCTATGCGGTAAGAGTCAAACAAATCAAAGTTTGTCGATTAATCATGCTAAATTGCATTTTCTTAATGAATGCTATCCATGTGATCGTTGTAGCAAACAGTTTTATAATGGAATGATGTTAGTGGAGCACTTGCGTAAGGAGCATAGAGTGTTTGTGCCATTCCAGTGCCAAAAGTGTGATGTGTTGTTTGAAGAAAAGAAATGCTTACGAAGGCATAATTTGTTTGATAGTTGCAATCCGATATCTCAACCCAAGTGtattgaatgtaatattatatttcaacaaaagaAAAACTTGGGTAAACACCAGAAAAAAGTACATGGGAAAAAACcacaaattgattattattgtgaacattGTAATGTCCACTTTAAATTCAAAGAATCTGTTAAGATTCATTTAAAAGCACGACACAgtgaaaatgcattaaaatataaaaaaaaaagtgatgtaTCCTACATTGAGAAAACTTTAAGAAAACATCATACAaaagaatatattgaaaatataaataaatgtgatcaatcaataaaattattttttaattttaatgatttcccTAATAAACTTGACAGATTAATGGAAACAACTAACAGAGATATTGATGTAGCAATTGAATACGATGACAATTTAATTGAACGACTTAACAGACCGAACGAATGTGTTTTCAATAGAAACAATTGTATTGATAATACtggtaaatttgtaaaaatgtcttATGATCGTATTGATTTTCCAAATGAGTATGCTTACAGTAAGAATGAATGGCTCAAGAAGTTGCTAGAGTTTGCTGATGAAACTTGTGgtattaattctaaaaacatATATGAGTACGGCAAGGCGAGACAATGTactaataaaccaaaaaaattatttaacgattGTAATGCCAAACGATTATACAATGAATTATCAAAATGGCGGAATGAAATGAGAATTTCACGAagatttcacaaaaaaatgcTCGTTACTTTTTCTGATTGGCTAGAAAACCCtcaaatgaaaatcaataaaatacgtGTCCCTATGGAGATGCGTGGAAAGAAACATAACACTGTTTTGTCACCTAAGCACAACATATTTGAACTTCCAACATTGCAACGGATGCACAGGTGTAGTGTGTGCTATAAAACATTTTCCACCCAATCTCTGTTCCTAGACCACATATTAACCGATCATAAGACTAATGAACTATATGAATGCAAATCTTGTGATAAAgagttttcaaataaatcaacattAGAATTGCACCAAGCGTTCCATACAGTCTTAGATAAATATACTTGTGACTTATGCTCAATGTCATTTATAACAGCAGTAGATTTTAAGCGACATGATTGCACAGAAAAAAAATCCCTAAAGTGTGAAGTATGCTATCTAGATTTTGTTAAACCAAAATACCTCAAGATACACCAAAATATTCACAAGAATAACACTAATTACATTTGTGAATTTTGCCCAGAATTTACGTCCTCATGCATTGCAGATCTGCAGGAGCATATCAGGTTAAACCACGGATTTCCAGCACTTGATTGGTCCAAATTTTAG
Protein Sequence: MDKYNNNKTKKMIEFNEKPMQLVNGRLLHYKNHHYNEQILNKSTSTTNVKDPTILNCMHTYAIYHEKKIPESQVNFEDSDNVKVQQMTNQNLQYQSFFSSDGLIVTPIPLTKTSLLSPLVKNPKSSSMIKDCNVGIPVQLDSQVKSNINNDISESAIPLDYSKKHSWIKCENKNNCCTNNTDLNNKLLNLSVENGGSLIINKLTSDKSKKFQNCLPIKDRSYVVLKMDVDKANITGDNSRQNSFNKEYSNKGSLIRPTVDESKTHLCNKKSTENLKTSSMGQTSEDELVVLNDYSIIQTNYAKEQASSNFKPKMVVNKSYKNGGFSNKNNFSKISSVKCNTKCDDGTRYQCVSRNQHCSNTKQNNFKNRISTLWEMEDGCIRTDISSSFSKGLNNVSNGPFKHKDKCKEQDNTKKDCHSKINLIPQLGINSSNTVVNISSFLEKNKLNKIQNYNSEQVSMTQKAANRIEKNTPSTGGCIMKLKPSKISNSVMQSVTTVYTNDISDLNINSTCIQNSTPENYKFTSLEQNCNIQNLPIIVIDDSSDSYENSSNIEKGLQNKSINIPIESRCNIKQSFYDKNKSALQLATAGFSGKNKVNKEPVNFQKIPLISQNNVPEKLDDDDTKQNKSNKEITILKKTEFNEFIMNKNSFKPTEKLTKVKNSILSGQHNQQKKLFYEAKLKECTVSNSDARIITNNLIQVRDVTKSDEIPTSIEKSIQIKDDGLLKNQKEILPTRCVDRIRFSQICSRRSIFRPTFKTKYTSNKIMKKENTRRKCNLCGRLIKCNSWLTHLQGIHNLYQYFCNLCGKSQTNQSLSINHAKLHFLNECYPCDRCSKQFYNGMMLVEHLRKEHRVFVPFQCQKCDVLFEEKKCLRRHNLFDSCNPISQPKCIECNIIFQQKKNLGKHQKKVHGKKPQIDYYCEHCNVHFKFKESVKIHLKARHSENALKYKKKSDVSYIEKTLRKHHTKEYIENINKCDQSIKLFFNFNDFPNKLDRLMETTNRDIDVAIEYDDNLIERLNRPNECVFNRNNCIDNTGKFVKMSYDRIDFPNEYAYSKNEWLKKLLEFADETCGINSKNIYEYGKARQCTNKPKKLFNDCNAKRLYNELSKWRNEMRISRRFHKKMLVTFSDWLENPQMKINKIRVPMEMRGKKHNTVLSPKHNIFELPTLQRMHRCSVCYKTFSTQSLFLDHILTDHKTNELYECKSCDKEFSNKSTLELHQAFHTVLDKYTCDLCSMSFITAVDFKRHDCTEKKSLKCEVCYLDFVKPKYLKIHQNIHKNNTNYICEFCPEFTSSCIADLQEHIRLNHGFPALDWSKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -