Basic Information

Insect: Sipha flava
Gene Symbol: -
Assembly: GCA_003268045.1
Location: NW:85865-88699[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0062 0.54 10.4 0.2 2 23 127 146 126 146 0.91

2 17 1.2 1e+02 3.2 0.1 1 13 160 172 160 183 0.81

3 17 4 3.5e+02 1.5 0.1 3 22 235 254 233 256 0.85

4 17 0.014 1.2 9.2 0.8 1 20 303 322 303 324 0.94

5 17 0.25 22 5.3 1.6 3 17 331 345 330 351 0.76

6 17 0.048 4.2 7.5 1.3 2 23 362 384 361 384 0.94

7 17 8.7e-06 0.00076 19.3 1.1 2 23 391 412 391 412 0.97

8 17 4.3e-05 0.0038 17.1 1.3 1 23 418 440 418 440 0.97

9 17 2.7e-05 0.0024 17.8 2.1 1 23 446 468 446 468 0.99

10 17 0.22 19 5.5 0.0 1 23 479 502 479 502 0.93

11 17 1.1 94 3.3 0.0 2 20 520 538 519 542 0.87

12 17 0.0027 0.24 11.5 1.2 1 23 552 574 552 574 0.98

13 17 0.008 0.7 10.0 3.6 1 23 635 658 635 658 0.97

14 17 0.0024 0.21 11.6 1.2 1 23 670 693 670 693 0.96

15 17 0.00089 0.078 13.0 2.2 1 19 703 721 703 721 0.95

16 17 1.1 98 3.2 0.1 6 22 728 744 727 744 0.94

17 17 0.11 9.7 6.4 1.5 3 23 808 828 807 828 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0062	0.54	10.4	0.2	2	23	127	146	126	146	0.91
2	17	1.2	1e+02	3.2	0.1	1	13	160	172	160	183	0.81
3	17	4	3.5e+02	1.5	0.1	3	22	235	254	233	256	0.85
4	17	0.014	1.2	9.2	0.8	1	20	303	322	303	324	0.94
5	17	0.25	22	5.3	1.6	3	17	331	345	330	351	0.76
6	17	0.048	4.2	7.5	1.3	2	23	362	384	361	384	0.94
7	17	8.7e-06	0.00076	19.3	1.1	2	23	391	412	391	412	0.97
8	17	4.3e-05	0.0038	17.1	1.3	1	23	418	440	418	440	0.97
9	17	2.7e-05	0.0024	17.8	2.1	1	23	446	468	446	468	0.99
10	17	0.22	19	5.5	0.0	1	23	479	502	479	502	0.93
11	17	1.1	94	3.3	0.0	2	20	520	538	519	542	0.87
12	17	0.0027	0.24	11.5	1.2	1	23	552	574	552	574	0.98
13	17	0.008	0.7	10.0	3.6	1	23	635	658	635	658	0.97
14	17	0.0024	0.21	11.6	1.2	1	23	670	693	670	693	0.96
15	17	0.00089	0.078	13.0	2.2	1	19	703	721	703	721	0.95
16	17	1.1	98	3.2	0.1	6	22	728	744	727	744	0.94
17	17	0.11	9.7	6.4	1.5	3	23	808	828	807	828	0.97

Sequence Information

Coding Sequence: ATGCCGGCACACTTTATCCATCCGTCGCCCGAAGTGGTGTTCATGCGAAAACCTCAACGCGGTCAACTGCGATCGTTGTGCGGCCACAGGAAAATGTCGATCGCCGCGAGCAAACAAGTGATAGTGTACGCGAAACCGGATGACGGAGACAGCACTACGGACGCCGACGACGAACCGGCGATACCCGGAACCGACCGGAACCGCAAAGGCCGTCCCAAAGGGTCGAAGAACAAGTCACTGTTTAACTCGTTCAATCACCAGTGCGAGAAGAGATCATTTGCGTACTCTATGCGTCCCGGTCCGGCTGCGAGATGCGTGCCGTGTGGCCGGACGTACGACGGCCACCCGTTGGCCCACAGTCTGGAACACCATCAGACCGTTTGTCCCGTGTGCGGCCGTTCATTTAAGTTGTCGTTGGCCGAGCACATCAAATCGCACGGGACGCGCTATCAGGTGAACATCATGACGGTCACGTGCTACGAGTGTTACGATTGTCGCGAAAAGTTCGGCAACGCCCGGATCATGGCGGAACACGTGCTGGACGAACACGTCGCTTACAGCAATGACGGCGGAGGAGACGGTGGACGTCGTGACGGACGATGCGCGTTGTGCGACTCGGCGGACATTGCGGACAGTGAGGACGGACTCCGCGACCACGTGTCCGCCGTCCACGCGGCTGACGTGAGCGATTTCCCGCATTTGTGCGCGTACTGCGATCAGCCGCAGCCGGATCAGGCCAGCCTGGTAGAACATCTGGTCGGCAAACACTCGCGAAAAACGGCGGAGGTCGTGGTCAACGGCCTCGGGTGCGTATCGTGCGACCTGTGGTTCGGTGACCGGTCCGCGGTGGCCGACCATCTGGTCGACGTGCACTGCCCGGTGAAGACGTTCAGCCATCCCGCGGTGTACCGGTGCCGGGTGTGCAAGGCGGGGTTCAAAACGCAGATAAACGTGCTGCGGCACGCGTGCAACGGCATCAAAGTACCGCATTGCGAGCTATGCGACAAGACGTTCCCGTCGAAGATGAGGTACGCGTTCCACTTGCAGTTCCACGAGCACCCGCTGTACGCGCGGATGCACCTGCACTGCGACCTGTGTCTGGCCGAGTTCGCGGACGAGTATCACCTGTACGATCACATCCGATTCCGGCACGAGCTGCACGACAAGGCGGTGTGCGAGATCTGCGGCCGGACGTTCAAGTCGTCCATGGGCCTGAACATACACCACCGGTACCACGACGGGCTGCGCAACTTCACGTGCAAGGTGTGCGACAAGTCGTTCCTGAACAAGTCCACGCTCAAGGAGCACGAGATATCGCACATGGACGTCAAGCCGTACCAGTGCCACATATGCGGCCAGTATCTGAGCCGCGCGTCCCGGCTCAGGTCGCACGTCAAGACCCACCGAGCGGCCGAGTCGACCGAGCAGACGTGCTACTGCTGCGGCACGTGCGGGTTCGTAGCCCCCGGGCCCGGGCTGCTCGCCCGGCACGCGGACAAGGAGCACGAGGACGGGGACCGGGCCGGCGACGCGGTAGTGCAGTTGGCGTTGGTGGTCAAGTGCGAGTTCTGCGACTCGACGTACGCGGACGCGGCGCGCCTGGACGAGCACCGGGGTGCGGCGCACGCGAACGCGGCGGACGACTCGGAAGCGTTCGTGTGCATGGTGTGCTCGTCCGCGTTCAGCACCTACTCGCGCCTGACCACGCACAAGCTGACGCACGGCATCAACGTCGAGTCCGTGATGGCCGACATCGGCCGCGAGTCCGAGAGCGCCGACGACGATTGCAGCCGGTTCCACATACCACAGTACTTCTCGTGCCAGCACTGCGCCAAGATGTGCCTGCATTACACGTACTTCTGCCTGCACAGGCGGCTCAAGCACGCGCCCGGCGTGAAGACGCACACGTGCGACCTGTGCTACATGGACTTCAAAACGTCGTGGAAACTGACGTACCACAAGAAGACGGTGCACGGGCAGCTGGCCACCGTCAAGTCTAATTACAAGTACCAGTGCACCGTGTGCTCGCGCAGGTTCATGAAGCTGGGCGCGCTGAACCTGCACAAGACACGTACGCACATCGACGTGGTGGGCGACGTGTGCAAGTACCTGTGCCACCGGTGCGGCAAGTTCTTCAGCTCCGAAGAATCGCTGAAGACGCACGACCGTGACGACGCGTCGTGCGAATACCGTTGCAACGACCCGGCGGCCGTGCGGCGGCACCAGCGCAGGACGTACAAGATGTCGTCGGCAACTACCGTTAACCAACCACCGGCGCCCTCGTCGCCGGCGTCGAAGGAACCACAGGCTTGTTGCAGCAgtaacagcagcagcagcatcaACGGCGTCCGGACCGAAAACGATGCGGCCTCGCCCGACGATCCTGCGCCGCTGCACCCGCCGTCCACCATCGACGTTTTGTGCGTGCTGTGCCACGAGCGCTTCCTGGATTCCGAGCTGTTCCGGCAACATCTGCGTGAACACGTTACTTCGTACGGTGCGTTTCTGTGCGAATCGTGCCTCGTCCCGTTCCTGTCGTCCGCCGCGTTCAATGTTCACATGACCACTATGTGCCCGACTGCGCTCGTTCCGCCTGACGTGCGATTCTTCGACGTCCCCAAAAAAGAGCCTCCCGATGAACAGAAACCACTAGTCGTCGACTGCTCCGCGATATTCAAAACCACGCCGCCCGAACAAAGTGCCGAAAACGTGTTGCCCGGCATCGACGAACGAAAGGTTTCACAGACGTCCTCGGTCAATGAACTCTTCACGTTCGTTTCCACCTCACGCACCACAGTCGTGTTGGATCAAATGGATTCCTTACGGACGACGTAA
Protein Sequence: MPAHFIHPSPEVVFMRKPQRGQLRSLCGHRKMSIAASKQVIVYAKPDDGDSTTDADDEPAIPGTDRNRKGRPKGSKNKSLFNSFNHQCEKRSFAYSMRPGPAARCVPCGRTYDGHPLAHSLEHHQTVCPVCGRSFKLSLAEHIKSHGTRYQVNIMTVTCYECYDCREKFGNARIMAEHVLDEHVAYSNDGGGDGGRRDGRCALCDSADIADSEDGLRDHVSAVHAADVSDFPHLCAYCDQPQPDQASLVEHLVGKHSRKTAEVVVNGLGCVSCDLWFGDRSAVADHLVDVHCPVKTFSHPAVYRCRVCKAGFKTQINVLRHACNGIKVPHCELCDKTFPSKMRYAFHLQFHEHPLYARMHLHCDLCLAEFADEYHLYDHIRFRHELHDKAVCEICGRTFKSSMGLNIHHRYHDGLRNFTCKVCDKSFLNKSTLKEHEISHMDVKPYQCHICGQYLSRASRLRSHVKTHRAAESTEQTCYCCGTCGFVAPGPGLLARHADKEHEDGDRAGDAVVQLALVVKCEFCDSTYADAARLDEHRGAAHANAADDSEAFVCMVCSSAFSTYSRLTTHKLTHGINVESVMADIGRESESADDDCSRFHIPQYFSCQHCAKMCLHYTYFCLHRRLKHAPGVKTHTCDLCYMDFKTSWKLTYHKKTVHGQLATVKSNYKYQCTVCSRRFMKLGALNLHKTRTHIDVVGDVCKYLCHRCGKFFSSEESLKTHDRDDASCEYRCNDPAAVRRHQRRTYKMSSATTVNQPPAPSSPASKEPQACCSSNSSSSINGVRTENDAASPDDPAPLHPPSTIDVLCVLCHERFLDSELFRQHLREHVTSYGAFLCESCLVPFLSSAAFNVHMTTMCPTALVPPDVRFFDVPKKEPPDEQKPLVVDCSAIFKTTPPEQSAENVLPGIDERKVSQTSSVNELFTFVSTSRTTVVLDQMDSLRTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01347516;
90% Identity: -
80% Identity: -