Basic Information

Insect: Sipha flava
Gene Symbol: -
Assembly: GCA_003268045.1
Location: NW:1003630-1009451[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00017 0.015 15.2 1.8 1 23 201 223 201 223 0.98

2 12 9.9 8.6e+02 0.3 0.2 15 23 299 308 290 308 0.85

3 12 0.025 2.2 8.4 4.7 1 19 322 340 322 345 0.95

4 12 1.6e-05 0.0014 18.5 4.2 1 23 351 373 351 373 0.98

5 12 6.6e-05 0.0058 16.5 0.7 1 23 380 402 380 402 0.95

6 12 0.075 6.6 6.9 3.9 1 23 533 555 533 555 0.96

7 12 0.0015 0.13 12.3 10.0 1 23 561 584 561 584 0.94

8 12 4.1e-06 0.00036 20.3 1.3 1 23 593 616 593 616 0.97

9 12 9.4e-07 8.2e-05 22.4 1.8 1 21 621 641 621 643 0.94

10 12 9.9 8.6e+02 0.3 9.8 1 19 649 667 649 672 0.73

11 12 0.00061 0.053 13.5 2.9 1 23 685 707 685 707 0.98

12 12 8.9e-05 0.0078 16.1 3.5 1 23 712 735 712 735 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00017	0.015	15.2	1.8	1	23	201	223	201	223	0.98
2	12	9.9	8.6e+02	0.3	0.2	15	23	299	308	290	308	0.85
3	12	0.025	2.2	8.4	4.7	1	19	322	340	322	345	0.95
4	12	1.6e-05	0.0014	18.5	4.2	1	23	351	373	351	373	0.98
5	12	6.6e-05	0.0058	16.5	0.7	1	23	380	402	380	402	0.95
6	12	0.075	6.6	6.9	3.9	1	23	533	555	533	555	0.96
7	12	0.0015	0.13	12.3	10.0	1	23	561	584	561	584	0.94
8	12	4.1e-06	0.00036	20.3	1.3	1	23	593	616	593	616	0.97
9	12	9.4e-07	8.2e-05	22.4	1.8	1	21	621	641	621	643	0.94
10	12	9.9	8.6e+02	0.3	9.8	1	19	649	667	649	672	0.73
11	12	0.00061	0.053	13.5	2.9	1	23	685	707	685	707	0.98
12	12	8.9e-05	0.0078	16.1	3.5	1	23	712	735	712	735	0.97

Sequence Information

Coding Sequence: ATGGAGATTGATAGTCGTTTCATAGCATTTGAAAACGATCACACTTATTTAAAAACGACTTATGCTAACAGTAAAAATGCAGCATTTTTACAAGCTACATTTTCAACAGTTGAATCCAAAgacaaaactattttatcaaaaactccATTGACTAAAATACAAAGTACTGTTGataaaaatgaatctatggaAAAATCTGTCAATTCTTTGAATATACcaaattcaaatgtatattttatttccaactCATTAAATTTTCCTCtacattcaaatattcaaatatcacaaaataatttaccaatacaacatattaacattgaaaataaatcaattatcagacctataaaaccaaaaataacaaatgatgtGGAAATTATTTCTTCTCCGCAAAGACGATCAAATGCatctctaaataataaattacaaaatacgacattaaaaaataatttatctaccaAACCTAAATTGGTCAATGATTCACAAGAGAaatcttttattaaatctatgaataataaaatattaaaaaattatgaaaatggaTTATTCACAATCAAACTGTCTTCTAATTTACTAAAGCGTATTCAGAATggacaaaatttatttatgtgtgtagaatgtaataaaatgtatactgaaCATAAAGATTTGTTGGATCATCAAATGACTCATgataaatgtactaaaaaaataattgattctaaagaaaaaagAGAAAGAGAAcatgcaaataattttaaaatttgtggaGACATTAAAAATGGAAATGAAAAATTTACCAATGACACCCATGATTTCAACAAACAAACCAaacctattttaaaatcttcagtAAATTCTAAAAAgcgaaaagttatttttcaaggCGAATGCATCATGTGTCATTCAGTATTTCCAGATCTTGGTAAACACATAAGAACTGTTCACCAAAAtgacttaaataaaaacaaaggtAGTCATTTACAATACAACTGTTTCAAGTGCGATATGAAGTTCGATACTAAACAGCATCTACATGCTCATGACTTACATGCGCATAAACCTATTTATTCACACACTTGTGAACATTGTTATAAAGATTTTACATACAAAGCAGACTTAGAAACTCACATGGAAACTCATTTTAATGACAGTAAGAAGTACCTATGTCCTTATTGTGATGTTGGTTTTTCTCATTCAAATGGCTTAAGAACCCATTTAGTTAAACATATTGGTTCTAGTACTCCTGAAAATTCAGCTTTTGAAATACCAGATTGTAAAATAGAATATAGTCCGACAAGACCACCTGAACAATTGGATCAGTTATTTGaagaattgaataatatttcaaatgatgTCGATGATGTTTATAATGATCAAGTTTCTGATGATAATTATCGAGTTAAGCTTGCAAATGaagaaactaataaattatcaataataaactcACTTACTACAGAAAACCTAAACATTGATAAAGAATTAAACAAtgtaCCGTTAGAGACTACATTATCAGATAAGACACGCATAAGTTATACTATGTGTCGGATATGCTTGATTATTGTAAGTTATTCAAGAATTGGTAGGCATATgaagaaaaaacataataatgctGCTCCTTATCAATGTGAAGTATGTCATGCTGAATTCAATCGCAAGCACATTATGGATGATCACCGTCGAAAGCACACAAATAATAAACCACATaaatGCATTCAGTGTTCCAAATGTTTTACCTACAAACACCATCTCAATCGGCACATGATGATAGTTCATAATGGTGACTCAATAGAAAAACCATTCAAATGTTCCGTCTGTGATAAAGCATTTTCTTTTAAGGAATATTTAACACTACATGTCAAtagcCGCCACAAGGGCAAACATTATATGTGCCAGATTTGTGGCAAAAGTTTTTCTACCAATGCAGCTTTAAATAAACATCAGTTGTGTCATACAGATGAACGACCATTCATGTGTGAACATTGTGGACGAACATTCAAATGTAAAACTCATTGTgacacacataaaaaaaatatgcatccAGGAGACCCAGAACTAGCATTACCGCCCGAAAAATTCGAGTGTAAtctgtgtaataaaaaatttagcaCAAAAGTATACCGTGATATGCACTTGAAGAGACATAATGGTCTAGGTCATCAATGTGATATATGCTATAAATTGTTTGTTTCTAAAGCACATATGCGAAggcatataaaaattatgcatcgcaactaa
Protein Sequence: MEIDSRFIAFENDHTYLKTTYANSKNAAFLQATFSTVESKDKTILSKTPLTKIQSTVDKNESMEKSVNSLNIPNSNVYFISNSLNFPLHSNIQISQNNLPIQHINIENKSIIRPIKPKITNDVEIISSPQRRSNASLNNKLQNTTLKNNLSTKPKLVNDSQEKSFIKSMNNKILKNYENGLFTIKLSSNLLKRIQNGQNLFMCVECNKMYTEHKDLLDHQMTHDKCTKKIIDSKEKREREHANNFKICGDIKNGNEKFTNDTHDFNKQTKPILKSSVNSKKRKVIFQGECIMCHSVFPDLGKHIRTVHQNDLNKNKGSHLQYNCFKCDMKFDTKQHLHAHDLHAHKPIYSHTCEHCYKDFTYKADLETHMETHFNDSKKYLCPYCDVGFSHSNGLRTHLVKHIGSSTPENSAFEIPDCKIEYSPTRPPEQLDQLFEELNNISNDVDDVYNDQVSDDNYRVKLANEETNKLSIINSLTTENLNIDKELNNVPLETTLSDKTRISYTMCRICLIIVSYSRIGRHMKKKHNNAAPYQCEVCHAEFNRKHIMDDHRRKHTNNKPHKCIQCSKCFTYKHHLNRHMMIVHNGDSIEKPFKCSVCDKAFSFKEYLTLHVNSRHKGKHYMCQICGKSFSTNAALNKHQLCHTDERPFMCEHCGRTFKCKTHCDTHKKNMHPGDPELALPPEKFECNLCNKKFSTKVYRDMHLKRHNGLGHQCDICYKLFVSKAHMRRHIKIMHRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01347496;
90% Identity: iTF_01347496;
80% Identity: -