Sflv004504.1
Basic Information
- Insect
- Sipha flava
- Gene Symbol
- -
- Assembly
- GCA_003268045.1
- Location
- NW:1014464-1022935[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.019 1.7 8.8 1.6 1 23 105 127 105 127 0.94 2 26 0.0033 0.29 11.2 1.3 2 20 139 157 138 159 0.93 3 26 0.083 7.3 6.8 0.4 1 23 163 184 163 184 0.91 4 26 1.8e-05 0.0016 18.3 3.9 1 23 216 238 216 238 0.99 5 26 0.24 21 5.3 2.0 1 20 266 285 266 287 0.91 6 26 0.0037 0.32 11.1 0.1 1 20 311 330 311 332 0.95 7 26 1.2 1e+02 3.2 1.7 1 23 690 713 690 713 0.82 8 26 0.79 69 3.7 1.4 1 23 719 741 716 741 0.91 9 26 0.0016 0.14 12.2 4.5 1 23 818 840 818 840 0.98 10 26 0.019 1.6 8.8 4.9 1 23 846 868 846 868 0.94 11 26 0.046 4 7.6 4.2 1 23 903 925 903 925 0.94 12 26 0.18 15 5.8 3.6 1 23 964 986 964 986 0.92 13 26 0.076 6.6 6.9 3.0 2 23 1022 1043 1021 1043 0.93 14 26 0.0039 0.34 11.0 4.8 1 23 1103 1126 1103 1126 0.95 15 26 5.2e-05 0.0045 16.9 2.5 3 23 1179 1199 1177 1199 0.97 16 26 2.1e-05 0.0018 18.1 1.7 1 23 1205 1227 1205 1227 0.99 17 26 0.00017 0.014 15.3 2.3 1 23 1287 1311 1287 1311 0.90 18 26 0.00045 0.04 13.9 3.3 1 23 1315 1337 1315 1337 0.98 19 26 0.00065 0.057 13.4 1.3 1 20 1374 1393 1374 1395 0.95 20 26 0.00018 0.015 15.2 2.0 1 23 1427 1450 1427 1450 0.95 21 26 1.8e-06 0.00016 21.5 0.6 2 23 1460 1482 1459 1482 0.95 22 26 0.00023 0.02 14.8 0.4 3 21 1491 1509 1489 1510 0.93 23 26 0.00019 0.017 15.1 3.2 1 23 1544 1566 1544 1566 0.98 24 26 0.0054 0.47 10.5 1.3 1 23 1571 1594 1571 1594 0.97 25 26 0.002 0.18 11.9 3.2 2 23 1624 1645 1624 1645 0.98 26 26 0.00013 0.011 15.6 5.2 1 23 1651 1673 1651 1674 0.96
Sequence Information
- Coding Sequence
- atgacttcGAAGAAAGACGCAATCCAAGTTGATCTCATTGATGAATCTATCAATGTTATTAAtAATATAAAGATTGAAGACTCAATTGATGAACATTCATCATGTCTATTTGTTAATAGTACAGCTATGATTTCTGAagatacagataaaataattaaacatgaaaaagatGTATTGGATGATGGTATGTGGGAAAGTACAATGGAAATTCAAAAATCCACAAATCAAAATAACTTGATGGGACCTATAAATcagaaTGTATCCAACTATAAATCTGACTTAAATCATGAAAATACAACTCCTAAGAATACATTTTCCTGTATAATTTGCAAAGAAAGCTTTCCTTTGCATTTTCAACTAAAGAACCAtatgataaatcataaaaaatcatCTCAAGTCTatagaaatgtaaataaatgcaAACTTTgtggaaaacaatttaaactaaaCTTTAGTTATAATAGGcatgttgaaaaatgtaatttatttgaatgtgaAATATGTGgagattttgttaaaaaaacagaatataCTGAACACATGCAAACTCATGAAGGTGGATGCTCTgggaataaaattgattttattcctaatttaaaattgtgtaaacTAAATGGTGTTTGGAAAAGTAAaccaaattgtatttataaatgtaaaagttGTTTTGAGAAGTTCTATACTAAAAGTAACTTGATAGAACAtatgaaaaaacataatgataatgatagtTGTACATTGaatgaagattttttaaagtataaatctGTTCCTAAATCAAAATTGACTAGAAATCCATTTAAATGTCAGAAGTGTAATCTAAGGTTTgacaaacaatatatattagaCCGTCATTTAACTCATTGTACTGCAAATTCTAGTAAAATATGGAATAAATTTCGTGGTAACGTCAAGACTAAtacaaaaaaagcatttttttgcAAAAACTGTGGAATAGGTTTTAATACCCGTTTGTTACTGAATAATCACATTGTTTTGGGTTGTAAAAGTTGCAGTAACAAAGATTcttggtttaaaaatatgttaaaaaataaaaatcttaaacagtctataaaatctaatataaataaaatgcataatcaaaatataaacaataatgatggtcatataatgaaaaataattcaaacgtCACTAAAAGATCTGATCAAATAGATACAGTCCACAGAAATAAATCAACTATAATGTCACATAATTTAAAGATGAATATTTCTGATCTAAatataaagaaagaaaaaatatcatctTCTAATGTCATAGAAATAGATTGTACCGATCAAACAATTGCAACTAATAGTGATGAATCTACATTACAAACAGTACCTCAGTATTTCATGATGAatgattatatttcaaatgtaaagAAAGAAAGAGACCCTTGTACAAatactactgaaaaaaataagttagaTCTAATAAATGCAACTAATTATAATGAATCAACATCTAAAACAGTTTCACATAATGTAACAACAAACAATTGTAGTTCAagtaaaaagaaagaaaaaacagaGATTGGAAACaattgtcataaaatatatactgccAATAGTTATGAATCAACTTTATCATTAGTTCCAAGTAATTCAGTAGTAAATGATAGTAGTCaaagtttaaagaaaaatgaaattatgaatacattCACCTCTATTAGAAAAAATTCTGATCTAATGATTGTTaggaataattcaaatattacaaGAATAAACAGTTCAGATCAAATAAATGCAGGAAATAGTAATGCACCGAACATACAACCAAAATCTCTTGCTTCTGTAATGTATGATCATAGTCTAAatataaagaaagaaaaaaatgaaaggcTTTGCAGGAGAAATGTCACAGAAATAAATGGTAATGCATCAACTTTACTAATTTCAGAATATTCAACAGTTAAACAAGAGCATGTTACTTTAAATGATAATGATCACTTCTCAATTACACCAAGAGAAACTGATTATTTGTCTATAAGGAAATTGTCTGACATTGAAAAAATACCTTATAATACCAATGATTGTAACTTGAAGTCAGCATTccaaagtaattttaagtttctatgtaaaatttgtaataaatcatCATTTAGTGATGTACATACATTTGCATTGCACATGAGTGATCATGCTGAATGTAGCATTCATGAGTGTATTGTATGTAATGAAATTTTCAGTACTGTACTTCTTTGGAAAAATCATATGACTTACCATCAAGAGAaagtagatttaaatttatcgaaaacccaattaaattgtatagataTTGAATCTAATGTTTTAAGCATTAATAATTCGGAAAGCATAATACCTCAAGCATGTTCAACAACCTTCagaaataaacgaaataaacaagtaaaatcaatttctaaattaatatcaaaatttaaaaactcacgttacaaaaatgtaaaaaactttGCCAAAATGTCTAAAAAACAGTATCAGTGTGATATatgttcaaaacatttttattctcaTCTCACATTAACGGTGCATCAAACTGTTCATAATATTTCAAGACCATTCTCCTGTAAGTATTGTAACAGAACTTTTTCATCTAAGGGTCCTTGTACAAATCATGAAAAGTCACATAAATCTGATAAAAATAGTTTGCTTAAAACTGAAAATGAAGAGGAATGTGGACCTATTGAAACCTTAAATGACATAAAAAGTGCAGTAAACAATGTTTACAcattttcttgtaaatattgTGAAAGAACATTTTCTTCCCGAGGTCCATGTACAAATCATGAGAAGTCAcatatcttaaatataaataatttatcctcGTACAACATTAAAGATAAAGAACATATTGACTCTGGATCAGTTGAATCCCAAAACAGCACAAATGTAGGAAATAATTATGTTGACAAATTTTCTTGTAATTATTGTGatagaacatttttatcaaaggGTGCATGTACAAATCATGAGAAGTCACAtaaatctgataaaaataatatgcttataACTGAAAATGAAGAGGATTATGGACCTATTGGAACcctaaataacataaaaagtgcagtaaaaaatgttaacacaaTTTCTTGTAAATATTGTGAAAGAACATTTTCTTCCAGAGGTCCATGTACAAATCATGAAAAGTCACATACCACATCTTTAAATTATcttaacctatataatattgaagacaaagaacatattaaattaagatcAATAGGAAATTTACAAATTCCTAAAGAAGAAGAACCTATTGtaactcaaaataaaattgaaacagaAAATGGCAGTGTTGACAATCATGAAAATAAAGATAAAGTtgataaatttgtttgttttatttgtaaaaagaTATTTACTAAGCATTGTTCCTTGATAAACCACATTATGTTTTTGCATAAAGCAGATCCAAATTCACCTGAACTgcttgttaatttaaataatatgagtaaCACCAACAGTACATTatctaaaaatacaacaaaaatgaataagttGAAAAAAGGGAAGAAAAAATTAGTTGGAAATAGTAGATTTACAAATAAACCAATAGCATGCACTATATGTAAGAAACATTTTGTACATAATGGTGCCCTATTTAGTCATATGAATTCTCATACAGATCTTAAACCATACAAATGTCAGTATTGTGACAAAAAGTTTAATATGAAAGGCCCTTTGACTCTCCATGAGAGAACTCATAAATTCAATAGaggaacaaataataataaaattttaaataaagtaaaaatagaacCTAATGAGGAACAAGATATTGGAAATAGTGACAATTTTGAGCttgctacaaaaatatttaattcaattgatAACAATGACAATCCATTTGACACTTATGACAATAAGCAAAATCGTATGTGGTTTGCTTGTGATGTATGTGATAAGAAATTTTCTACTccatttaaattgataatacacAGAAAATCAAATTGTCATGTTGAAccatatgtatgtaaaatttgtaataggTCTTACTCTGTGAGACACCGTTGGAATAGACATTTAAAATCTCACTACATACGGAACAAACtgatcaaaaattcaaaaaaaaatagacaaacaaacaattttaaattggatactaataaactatttgttaaacCTGTACAACTGAAAAATCAGTATAAATGTAGTTACTGTAAAAAAGAATATAGTTCAATATCGTATTGGAAAAAACATTTGTCATTGAGTAAAGAGTGTCGTCGGCATTGTAAACATGGTCTTCCAGAATTTAGGTCAATTCAAGCAAAAgataaattcttaaaaactgAGACTAAAGTATTTGAATGTCatgtttgtaaaaaaacatatagCACTGCCTACAATCGAAAAATTCATCTtataaatattcacaaaattTCAGAAAATGTCAGTGATACTCAATGTAAGATATGTGGTAAAAATTACAGTAATAAAGCTAATTTAAGTAGACATTATTCTGTAATACACACAAAgggtaataaatgtattaattgcaCTGACTGTGGAAGAACATTTAAACACATATATTCTTATCAAGAACATGTAAGAATTAAATCCTTAAAGTTGCAACAAAGTAACAAAGCAATGAGTAATACTAATAGAAATTTAACACAGCacattatggaaaataataaatgtaatattgtgaaatattcttgtaaaatatgtaaaatggaATTTGctcataaaataatgttacagaGACATTCAAAGACACACACAGTTACcatgtataaatgtaaagactgtaatcagttatttaaatcaaatattattttgagcaagcatattttgaaaaatcacaGTACTAAGATTTCATTGAATAAAGGCAAATATATTGAAGACAATGCTATTCAAAATACTACACAATCAAAAAAAGAGGTACCAGCtcaatgtaaaatttgtttcaaagttttaaaaacagtaaaatatttatctcatCACATGAGATTACATTCTGGTATCAAACCATTTAAATGTGACTTTTGTAATATGGCTTTCCGATTTAAATCAAATTGGAGGATTCATAGAAGAAAACACCATTTAGAAAATATGTCTTAA
- Protein Sequence
- MTSKKDAIQVDLIDESINVINNIKIEDSIDEHSSCLFVNSTAMISEDTDKIIKHEKDVLDDGMWESTMEIQKSTNQNNLMGPINQNVSNYKSDLNHENTTPKNTFSCIICKESFPLHFQLKNHMINHKKSSQVYRNVNKCKLCGKQFKLNFSYNRHVEKCNLFECEICGDFVKKTEYTEHMQTHEGGCSGNKIDFIPNLKLCKLNGVWKSKPNCIYKCKSCFEKFYTKSNLIEHMKKHNDNDSCTLNEDFLKYKSVPKSKLTRNPFKCQKCNLRFDKQYILDRHLTHCTANSSKIWNKFRGNVKTNTKKAFFCKNCGIGFNTRLLLNNHIVLGCKSCSNKDSWFKNMLKNKNLKQSIKSNINKMHNQNINNNDGHIMKNNSNVTKRSDQIDTVHRNKSTIMSHNLKMNISDLNIKKEKISSSNVIEIDCTDQTIATNSDESTLQTVPQYFMMNDYISNVKKERDPCTNTTEKNKLDLINATNYNESTSKTVSHNVTTNNCSSSKKKEKTEIGNNCHKIYTANSYESTLSLVPSNSVVNDSSQSLKKNEIMNTFTSIRKNSDLMIVRNNSNITRINSSDQINAGNSNAPNIQPKSLASVMYDHSLNIKKEKNERLCRRNVTEINGNASTLLISEYSTVKQEHVTLNDNDHFSITPRETDYLSIRKLSDIEKIPYNTNDCNLKSAFQSNFKFLCKICNKSSFSDVHTFALHMSDHAECSIHECIVCNEIFSTVLLWKNHMTYHQEKVDLNLSKTQLNCIDIESNVLSINNSESIIPQACSTTFRNKRNKQVKSISKLISKFKNSRYKNVKNFAKMSKKQYQCDICSKHFYSHLTLTVHQTVHNISRPFSCKYCNRTFSSKGPCTNHEKSHKSDKNSLLKTENEEECGPIETLNDIKSAVNNVYTFSCKYCERTFSSRGPCTNHEKSHILNINNLSSYNIKDKEHIDSGSVESQNSTNVGNNYVDKFSCNYCDRTFLSKGACTNHEKSHKSDKNNMLITENEEDYGPIGTLNNIKSAVKNVNTISCKYCERTFSSRGPCTNHEKSHTTSLNYLNLYNIEDKEHIKLRSIGNLQIPKEEEPIVTQNKIETENGSVDNHENKDKVDKFVCFICKKIFTKHCSLINHIMFLHKADPNSPELLVNLNNMSNTNSTLSKNTTKMNKLKKGKKKLVGNSRFTNKPIACTICKKHFVHNGALFSHMNSHTDLKPYKCQYCDKKFNMKGPLTLHERTHKFNRGTNNNKILNKVKIEPNEEQDIGNSDNFELATKIFNSIDNNDNPFDTYDNKQNRMWFACDVCDKKFSTPFKLIIHRKSNCHVEPYVCKICNRSYSVRHRWNRHLKSHYIRNKLIKNSKKNRQTNNFKLDTNKLFVKPVQLKNQYKCSYCKKEYSSISYWKKHLSLSKECRRHCKHGLPEFRSIQAKDKFLKTETKVFECHVCKKTYSTAYNRKIHLINIHKISENVSDTQCKICGKNYSNKANLSRHYSVIHTKGNKCINCTDCGRTFKHIYSYQEHVRIKSLKLQQSNKAMSNTNRNLTQHIMENNKCNIVKYSCKICKMEFAHKIMLQRHSKTHTVTMYKCKDCNQLFKSNIILSKHILKNHSTKISLNKGKYIEDNAIQNTTQSKKEVPAQCKICFKVLKTVKYLSHHMRLHSGIKPFKCDFCNMAFRFKSNWRIHRRKHHLENMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -