Sflv011667.1
Basic Information
- Insect
- Sipha flava
- Gene Symbol
- -
- Assembly
- GCA_003268045.1
- Location
- NW:26914-28044[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-07 0.00016 20.8 0.0 6 39 20 53 16 57 0.89 2 2 3 3.8e+03 -2.8 0.1 24 29 351 356 351 357 0.85
Sequence Information
- Coding Sequence
- ATGGTCAgaaactatgtaaaaaaaacaaaccgtGGTACAGTACCtgaagatatttataaaaaggctGCTAATGAAGTGTTAACAAAAGAAAGTTCACTAAGAAATGCTgcagaaaaatatgaaataaacttTATGACTCTTCAAAGATATATAAAGAAACAATCAAATTTACCACTAAAACCAAACCAAATCTTTTCAGATGAGTTAGAatctattttatctaattacttGGTACATTGTAGCAGAATTTATTATGGTCTTACACCTTCAGATGTTAAAGTATTGGCATATGAATATgcaaaatcaaataatgttgCATATCCCAAAGGGTGGGATGTACACAAAATAGCCTCTAAAGACTGGTTTActagttttttaaaaagaaatcctACCTTATCATTACGCTTACCTGAAGCAACTAGTCTTGGCAGAATCACCAGCTTTAATAGACACAATGTTgctattttttttgataacctACATAGTCTGTATGTGAAGCATAATTTTGAGGGGCATAGAGTATGGAATGTTGACGAAACAGGTGTCACAACAGtgcaaaaaccaaaaaaaattgttgcagAAAAGGGGAAGAAACAAGTTGGAAGGTCTACTTCTGGTGAAAGAGGAACAACTGTAACAATGGTGTTTGCAGTCAATGCAATAGGTAATTCTTTGCCACCTATGTTCATATTTCCAAGAGTTAATTTTAAACAGCATTTTGTAAGTAACGGACCTAGTGGTTGCATTGGAGCAAGCCACCCTAGTGGATGGGTCACTGCATCttcttttttaatgtttgttcagcattttcataaacatattaattgtaGTCCGTCATCTCCAGTCCTACTCATTTTAGACAATCATATTTCTCATTTGTCTATTACAGTTATTGATTTTTGTAAGGAAAATGGTATTGTATTGCTATCTTTTCCACCACACACTACAAATCACTTACAACCATTAGATGTGTCAGTATATGGCCcctttaaaacgttttataataattcagcTAGTGGGTGGATGGACACACATCCTGGTATCCCAATATCCATCTATGATATACCGTCATTAGTGAAAGAATCTCCCATTAGCAGCAActccaaaaaatataacatctGGATTTACTAA
- Protein Sequence
- MVRNYVKKTNRGTVPEDIYKKAANEVLTKESSLRNAAEKYEINFMTLQRYIKKQSNLPLKPNQIFSDELESILSNYLVHCSRIYYGLTPSDVKVLAYEYAKSNNVAYPKGWDVHKIASKDWFTSFLKRNPTLSLRLPEATSLGRITSFNRHNVAIFFDNLHSLYVKHNFEGHRVWNVDETGVTTVQKPKKIVAEKGKKQVGRSTSGERGTTVTMVFAVNAIGNSLPPMFIFPRVNFKQHFVSNGPSGCIGASHPSGWVTASSFLMFVQHFHKHINCSPSSPVLLILDNHISHLSITVIDFCKENGIVLLSFPPHTTNHLQPLDVSVYGPFKTFYNNSASGWMDTHPGIPISIYDIPSLVKESPISSNSKKYNIWIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -