Sper009428.1
Basic Information
- Insect
- Sinelater perroti
- Gene Symbol
- -
- Assembly
- GCA_036346155.1
- Location
- JARFIY010000020.1:161819-166377[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.1 6.1e+02 3.4 0.3 3 23 111 131 109 131 0.94 2 13 0.0019 0.54 13.0 0.5 1 21 177 197 177 198 0.95 3 13 4.1 1.2e+03 2.6 0.3 12 23 282 293 270 293 0.84 4 13 2.8e-05 0.0081 18.8 0.3 1 23 370 392 370 392 0.99 5 13 0.028 8 9.4 1.2 1 23 396 418 396 418 0.97 6 13 0.3 86 6.1 1.4 1 23 424 447 424 447 0.95 7 13 0.05 14 8.6 3.6 1 23 453 475 453 475 0.93 8 13 0.0025 0.71 12.7 1.3 1 22 481 502 481 504 0.90 9 13 2.3e-06 0.00067 22.2 3.0 2 23 512 533 511 533 0.97 10 13 8.1e-07 0.00023 23.7 0.5 2 23 539 560 538 560 0.97 11 13 7e-06 0.002 20.7 2.8 1 23 566 588 566 588 0.99 12 13 3e-06 0.00086 21.9 0.4 1 23 594 616 594 616 0.98 13 13 0.0015 0.43 13.4 0.3 1 21 622 642 622 643 0.95
Sequence Information
- Coding Sequence
- ATGAACAACTTTGAGCCTGACAAAGCGGAGCAAGGACGCTACTTGATAGCTCAGATTCGGAGGAGCGGCGCAAAGCGCTCGCTGTTCACCAGGAAGCTAAAGGAGAACAATGTCGGCACCGGGAAGCAGCAGCCTTCAAGTAGAAATGGCAAGTTCTGCTGCTCTGACCTGCTTCTGGAAACGAAGCGATGTAAATGCAGCGCCTGCAGATTAACCTTCTCCACTATGTACCAGTATAGCAAGAAAAAGAAACGCGGCAAAATGAAGCGGCTTGGCCATGCCGTTCGCGACACACAGGCGAGGGGCGAGTTCCAGCTTCAACTGTATTGGTGCATGGAGTGCAGAATCCAGTGCTCCGACGAGGAGGCCTACAAGGCACACGAGGAGCTGCACGTTCCACAGACGAAGGAAGTTTTTAAACGCGACCCTGAGCACTATGTAAATATTGACGGCATAAAAGTGGAGCTGGAAGACCACTTCGACTACGAGAGCACGATCTCCAAGAGAATGGGCACCCTGAAGAAGATCTACCAGTGCTCCGTCTGCAAGCAGGGTTTCCGCCTGCGCGGCCAGCTGAAGCTGCACTTCCGTGGCTGCAGGCGCGCCGCGGGGCGCGAGAGCTCGCCCGAGTACTTCAGCGAGGACAGTGACCGCGAGACTCCCAGCCTGTTCCTGAGCAGCGGCGAGAGCGAGGAGGAGGACGAACTGGAGATCGGTATGCTGGAGGTCAAGCCCATCGTCGCGGAGGAAATGAAGAAGCTGTACGATGCCGTGCAGATGGCCGAGGACGGCCCCGAGAGCTCAGACTTCGCCTGTCTCATCTGCGAGAACGGAAAGAAGATGACGCGCAAGCAGCTCGTGCGTCACTACAAGAAGCACGAGAAGCTGTTCGCGAGTCTCAGCGGGGCGGCGTACGAGAGCGCGGGCGATGGCGTGAAGCTCGAGGTCGCCCAGTACTACTGCCACGTGTGCAAGGACGAGAAGAAGATGACCAAGAAGGAGTTGAGGGAGCACTACAAGGAATGCCACGACATGAAAGCATTCAAGGTGAAGCAGTTCTTCCGGAAGGCTCGCTCGAAGCGGCCCAGATCACCCAGGCCCGAAGTCTACAGGTGCGAAATTTGCTCTTTGGAATTCGACTCGCAAATGAATTTGAATCTGCACATTCAGTCTCACGACGATCAGTACTCATGCGATATTTGTAACACTGGCTTTAAGAAAATGATCGATTATACATTTCACATGCAGAGCCACAGCGAGGATAAACTATACAAGTGTCTGCTTTGTCAGTTTAGCACCGACAAGAGTTACTTGGTGAAGTCGCATCTGTACTCTGTGCACGAGCagtttaagaaatataaatgtgAGGTTTGCAACAAAGGCTTTGCCATCTTCACCCACTTCCAGGAGCACAAATATTTTCATACGGGAGAAAAGCCATTCCAATGCGATATCTGTGGGCAGAAGTTCATGTATACTCGTTACTTGAACTCGCATAAGGTGCAGATGCACAAGCTCGGCCACCGGGGCATCGAATGCAAGATCTGCAAGAAGGTGTATTCGCACAGGAACAGCCTTAATACTCACATGAGGTCGCACACTGGCACAGTCTCCGTGTGTGATGTCTGCGGCAAGACCTTCAGCAGCAACGAAAAGCTGCGTTTGCATTATCGCATACATACGGGCGAGAAGCCCTACAAGTGCGACTACTGTGACAAGAGGTTCAAGACAAGCTCCTACCGTGCAGAACATGAACGCACTCATACTGGTGCAAAGCCTTACGAATGCCCCTACTGCGGAAAGGGATTTTCTCAGAGGACCAGCATGGTCATACACTCTCGTAGTCATACCGGAGAGAAACCCTACACGTGTCATCTATGCAACAGGGCTTTCGCTGCCAAATCCATGGTTACTATCCACCTTAAATCCTGCAAGGGAGGCATTATACACCAGATCAGTGATGATGAGTAG
- Protein Sequence
- MNNFEPDKAEQGRYLIAQIRRSGAKRSLFTRKLKENNVGTGKQQPSSRNGKFCCSDLLLETKRCKCSACRLTFSTMYQYSKKKKRGKMKRLGHAVRDTQARGEFQLQLYWCMECRIQCSDEEAYKAHEELHVPQTKEVFKRDPEHYVNIDGIKVELEDHFDYESTISKRMGTLKKIYQCSVCKQGFRLRGQLKLHFRGCRRAAGRESSPEYFSEDSDRETPSLFLSSGESEEEDELEIGMLEVKPIVAEEMKKLYDAVQMAEDGPESSDFACLICENGKKMTRKQLVRHYKKHEKLFASLSGAAYESAGDGVKLEVAQYYCHVCKDEKKMTKKELREHYKECHDMKAFKVKQFFRKARSKRPRSPRPEVYRCEICSLEFDSQMNLNLHIQSHDDQYSCDICNTGFKKMIDYTFHMQSHSEDKLYKCLLCQFSTDKSYLVKSHLYSVHEQFKKYKCEVCNKGFAIFTHFQEHKYFHTGEKPFQCDICGQKFMYTRYLNSHKVQMHKLGHRGIECKICKKVYSHRNSLNTHMRSHTGTVSVCDVCGKTFSSNEKLRLHYRIHTGEKPYKCDYCDKRFKTSSYRAEHERTHTGAKPYECPYCGKGFSQRTSMVIHSRSHTGEKPYTCHLCNRAFAAKSMVTIHLKSCKGGIIHQISDDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -