Sper076075.1
Basic Information
- Insect
- Sinelater perroti
- Gene Symbol
- PRDM10
- Assembly
- GCA_036346155.1
- Location
- JARFIY010000347.1:2082844-2099125[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.3e-06 0.00095 21.7 0.3 2 23 488 509 487 509 0.96 2 13 1.7 5e+02 3.7 1.5 2 23 540 563 539 563 0.80 3 13 0.34 97 6.0 0.7 1 23 580 602 580 602 0.94 4 13 0.0012 0.34 13.7 0.1 2 23 614 635 613 635 0.96 5 13 4.7e-05 0.013 18.1 1.0 1 23 649 671 649 671 0.99 6 13 0.06 17 8.3 2.9 2 23 680 701 679 701 0.97 7 13 0.011 3.1 10.7 1.1 1 20 708 727 708 730 0.94 8 13 0.0016 0.45 13.3 2.2 1 23 736 759 736 759 0.95 9 13 1.1e-05 0.0033 20.0 2.1 1 23 764 786 764 786 0.97 10 13 1.6e-05 0.0047 19.6 2.0 1 23 792 815 792 815 0.94 11 13 0.016 4.7 10.1 1.1 1 23 850 873 850 873 0.97 12 13 7.9e-05 0.023 17.4 2.3 1 23 895 918 895 918 0.97 13 13 0.002 0.59 12.9 2.6 3 23 958 979 957 979 0.97
Sequence Information
- Coding Sequence
- ATGCGTTCGAGAATGGACAGCTCTATCGAAGGGCCCCCGGACGGCGGAGGCACCATGACTGTTAACCATTTTGGCCACGGCGCGCCCTGGCAGAGCGCGCAGACACCCACGTCCTCTGCTGCGAATTCCACGCTGCTCTTCATTGCTGTTGAATACGTGAAAGACACAAATGAATACAAATTTACACCAGAAGTAGGCTACTCTCCCCAGGGAACTCCTCCATGCACCGACTTCGAACAGCATGTCAGCCCACTGGATCCGAACATGAGTTCAGCAGCCTGTTACAGCCCCTCTAGTCCATGCACCGATGCAGACATATCTTACAGTAATTCTACAGTTGTGCAGCGGCTGATCTCTGCCAGTTCAAATCAACAGCTATTAAACACTGCTACTGATGCCTATGTTGACAATCTACCTACCACTGGCGCTTCTTTGGAAGGCTTACCGACTTCACTCTCCAGCACAGATACAAACATTTTGAAGCAAGTGGCTACAAATAGGTACTTACTAGATCAACAAAGTGTGCCGGATAGCACGCCATCTTCTAACGTGCTGCAGCTGGTGCCTGAATCCAGCGCCGAACAGGAAGTCGAGCTGTTGATTACAGATCAAGCTACTgGTATTTCATACAATGTTAGCACACAGGAGTATTTAGTAGAGCGTTGCTTATCAGATGATCAACAGCTTTTGGATGCTTTAACTCCAGGCCCTCTGCTAGATTCAGATTTATTAGCACTAGATGACTCTGCCCTGAAGTCTCAACTACCCGATATTGTGGATTCAGTTAACAATACTACCGCATTGGATGCCCACCCTATAGTTTCGAATAATGCCCTTGTTCCTCATTCAAATGAAACCCAAAATTCGCCACCTCCATTAATAAAGATGGAATTTTATGATGATGAAGTAGCTGATGGTCTACCACAAGAAAGCTTGCGGCGATCTCAACGTCAGATTGAACTTCGATCCAACGATACCGAAGAACAGTTGTtAAGTCAGGTTCGTGCTATTACTGATAAACCGGTGGAAACTAGAGCACGCGCAACTTTACCTACCTCCTATTTGGCCATAATTAAACAAGGGGATGGTCACTATGGAGTGTTTGCTCGCAAAATGATACCTAAGCGCACTCAGTTTGGGCCCTTGGAAGGCATACTGGTCATTAATCAGAATGAGCTGAACAATTTAGACTTGCATTTGCTTGTAGAATGTGAGACTGGCTCGGTGCATCGACTGGATATTTCTGATGAAAATATTGCTAACTGGATGTGCTTTGTGAGGAAGGCGAAGACCTACTCGCAGCAGAATTTGTTGATTTCACAGCAAGGGAATTCATTGTACTACACGACGACCACAAATATCTGGCCGAAGCAGGAGTTGATGgTGGGCTATAGTATGACATATGCAAAGAAACATAACTTGCCTCTTCTACAACCGGTtccacaaaaagaaaatgactgGCCGTGCTTCGAGTGTGAGAAACGCTTTTCTTCATCAGATGACTTGCAAAAGCACTTGAATGTGCATGATGTGAagaaagaaattagtaaaataaaaaagaaggtgttgaaaagcaaaaagaagaagCTAAAGAAGAGATACCAAAGGCACATGCTGGAGTGTAAGATTTGCAAGGCTGCTTTTTTTAATCCTGAATATGGTAGCTTGAAGAGGCACTTGCTAAGCCATGGTATCAACTCGTGCACGTCGtttgaagataaatttaatgtCATCAGTCATAATTGTGAAAAATGCGAAGCAACGTTTGAGAAGGAAGCTCTTGTAAAAATCCATAGCCTGAGGCACAAGCCAAACCCAGCCGAAATGCTGCCCAGCCTTATTTGTCCTGAATGTGACACCGACTGCCCAACTCCAGAACAACTCATAGAACACATTGACCGACATCGAACTGATAAGGTGCCAGCTATTGAGTCAAAGGGTGGCTACAAGTGCCCTGTTTGCTACAAGGTGTTTGCATCTCATGACCGAATACAACGACATATGCTAGTCCATGGTTCAGAAGAATCGAAACCGTTGAAATGTGATACTTGCAACAAGAGGTTTTTAAACAACTCAGCCCTTGCTTGCCACCTAAAAACTCACAGCACTGACAGAAAGATATTTGAGTGCCCTATGTGTAAGGAGACGTTTGATCACGTATTGCACTTGAAAGTGCATGTGCCGCAACATTGCCAAGATGGCAAGTACACCTGCCCGCATTGCCAGAAAGTTTTCAAAGAGTATAGCATCATTCGCAAGCACATTCGAGCATTTCACTGTGATCGTAAGCACAACTGCCCACACTGTGGGAAGCCGTTTCCCACTTTAGATAAGCTGCGGATGCATCTGCTGCGTCATTCGGATCACAGGGAGTTTTTGTGTGCTGACTGTGGGAAGCAGTTCAAAAGGAAAGACAAATTGAAGGAGCATACCAAGAGGATGCATTCGGAAGAGAGGGAAAACACCGTTCCAAAACCTACCAAAGTGAATgtgcaaagtaaaaaatttaccCCTAAAGTGCAACCCACAGACTACCATcggtttatttataaatgtcacGCCTGTCTGGTTGGATTCAAAAGGAGAGgTATGCTAGTAAACCACTTGGCAAAGCGCCATCCTGATATAAGTCCAGACTCTGTGCCTGAACTCAACTTGCCTATTCTCCGGACCACCCGGGACTATTATTGTCAATATTGTGACAAAGTGTACAAAAGCAGCTCTAAACGAAAAGCCCATATCTTGAAAAATCATCCTGGCCAGGCGCTGCCCATGAGCAACAGACGGCAGGGCTCTTTCCCAGAAGTGGCAGGGCTACCCAACCCGACATTCTCACAAACCGTCGGCAGTATTACCACTCACCCGCAGGCTTGCCAATGGTGTCACAAGCAGTATGCCAGCAAGGCGAAGTTGTTGCAGCATCAGCGGAAGAAACACTCGGAGCTGTTGCAGAGCCAGGCGAGCCAGGTAAAGAATGAGGTGCACCACAACCAGGCGATTTCTCAGAAGGAAGACGTGGAGGAGATTTTCATCGACACGCACTCGTTCAAAAGGGATTTTAAGgTTTCAGATGAAGAATTGCTGTCAGAAGTAGTGGCGTTAAGTGATGATAGGGAAAACAAGCAATACTACCATATCATATCGGTACCACCCAACGATCCACTTAGTTTTAACCATTCTGCTGAGCTTGACCATACATCTGATTCTCACCTGTATCGTCTATTAACCACAAATGGAAACGGTTTGTTGCCTCCACGCTGA
- Protein Sequence
- MRSRMDSSIEGPPDGGGTMTVNHFGHGAPWQSAQTPTSSAANSTLLFIAVEYVKDTNEYKFTPEVGYSPQGTPPCTDFEQHVSPLDPNMSSAACYSPSSPCTDADISYSNSTVVQRLISASSNQQLLNTATDAYVDNLPTTGASLEGLPTSLSSTDTNILKQVATNRYLLDQQSVPDSTPSSNVLQLVPESSAEQEVELLITDQATGISYNVSTQEYLVERCLSDDQQLLDALTPGPLLDSDLLALDDSALKSQLPDIVDSVNNTTALDAHPIVSNNALVPHSNETQNSPPPLIKMEFYDDEVADGLPQESLRRSQRQIELRSNDTEEQLLSQVRAITDKPVETRARATLPTSYLAIIKQGDGHYGVFARKMIPKRTQFGPLEGILVINQNELNNLDLHLLVECETGSVHRLDISDENIANWMCFVRKAKTYSQQNLLISQQGNSLYYTTTTNIWPKQELMVGYSMTYAKKHNLPLLQPVPQKENDWPCFECEKRFSSSDDLQKHLNVHDVKKEISKIKKKVLKSKKKKLKKRYQRHMLECKICKAAFFNPEYGSLKRHLLSHGINSCTSFEDKFNVISHNCEKCEATFEKEALVKIHSLRHKPNPAEMLPSLICPECDTDCPTPEQLIEHIDRHRTDKVPAIESKGGYKCPVCYKVFASHDRIQRHMLVHGSEESKPLKCDTCNKRFLNNSALACHLKTHSTDRKIFECPMCKETFDHVLHLKVHVPQHCQDGKYTCPHCQKVFKEYSIIRKHIRAFHCDRKHNCPHCGKPFPTLDKLRMHLLRHSDHREFLCADCGKQFKRKDKLKEHTKRMHSEERENTVPKPTKVNVQSKKFTPKVQPTDYHRFIYKCHACLVGFKRRGMLVNHLAKRHPDISPDSVPELNLPILRTTRDYYCQYCDKVYKSSSKRKAHILKNHPGQALPMSNRRQGSFPEVAGLPNPTFSQTVGSITTHPQACQWCHKQYASKAKLLQHQRKKHSELLQSQASQVKNEVHHNQAISQKEDVEEIFIDTHSFKRDFKVSDEELLSEVVALSDDRENKQYYHIISVPPNDPLSFNHSAELDHTSDSHLYRLLTTNGNGLLPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -