Sper005017.1
Basic Information
- Insect
- Sinelater perroti
- Gene Symbol
- -
- Assembly
- GCA_036346155.1
- Location
- JARFIY010000002.1:4967097-4971771[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.46 1.3e+02 5.5 0.0 3 20 35 52 34 54 0.93 2 13 0.094 27 7.7 1.0 1 20 284 303 284 305 0.93 3 13 2.4e-05 0.007 19.0 1.4 2 23 315 336 314 336 0.98 4 13 0.0016 0.46 13.3 2.2 1 23 353 375 353 375 0.98 5 13 2.1 6.1e+02 3.5 0.8 1 14 406 418 406 427 0.74 6 13 1.2e-05 0.0034 20.0 1.0 1 23 433 455 433 455 0.97 7 13 0.0027 0.78 12.6 3.3 1 23 461 485 461 485 0.92 8 13 3.9e-05 0.011 18.3 1.5 1 23 489 511 489 511 0.98 9 13 9.8e-07 0.00028 23.4 2.9 1 23 517 539 517 539 0.98 10 13 0.0037 1 12.2 7.2 1 23 545 567 545 567 0.98 11 13 1.6e-05 0.0045 19.6 0.5 1 23 573 595 573 595 0.98 12 13 1.7e-05 0.0048 19.5 0.2 1 23 599 621 599 621 0.98 13 13 0.00026 0.076 15.7 0.1 1 23 629 652 629 652 0.97
Sequence Information
- Coding Sequence
- ATGGCCCCCCTCCTGCTGGACTGCCCGCTGTGTTGCAGCGAGACCTTCACCTGCCACAACTCCCTCAAATACCACTTGTTGAGCATATCGGACAACCTGCTCTGCCCTTCGTGTGAGAAGCGCTTTGAAAAAATAGTCGATCTCGCCATGCACCTCGGAAGACAGTGCAAGGACTCGGAAGAAGAACCGGTTGAAGTGGAAAGTGCCCAGGCCATGAACAAGGACCTGCAGGTTGTGGAGATTCAAATTAAGGAAGAGAATATGGAAAACGCTAGTGTTGGGGTGGAACTAGAAGTGACCGACAGTATACTGGCGACTGCCCTGATGAAAACGGGCGACAAAGCTGATGACGTTATTGAAAATAACTCTACAGTTCATGAAATAAACGATGATACTGTGATAGAGGATGTTGTATACCACTGCTCAAGCTgtgctattagttttacttgCATTGAAGAGCATCTTCAAAAGTATCATGAAGGTCATCAGGTTTTTTTACAGCACTCTGTCACGATAGAAAATGAGGAAGAATACGGCGAAGAGGGCGACGTCAATGACAACAGTGAAATTCTGAAGGAGCTCAAGTCCCCGGAGTTTCTGAAGACGCTGGAGGAACAGGAGTGCGTCGACAAAGACGGCTGCTTGTATACACGCAGGCTagtgaaaatagaaaagttctgggacgagaAGGAGATGAAAGTGGAGGCCAGTGAGAGCGAAAAGTTCGCAGCACTAGCGCACGCTAACTCCACAGAGCACGCGCATGCTGACTCCACAGAGCAACCCGACGTTCTCCAGAGCTTGCCGGTTTCAAATAGTGGGGACGACGATGGGAGCATCCTGGAAATCTACCAGTGTGCTAACTGTAGCAGAAAGTTCGCGTCCTTGAATGCCTACTCGGACCACAGGTGCGCTACCATACGTGGGAAGTCAAAGTACAAAAAGTGCCAGCTGTGCAAGTACACCTTCATAGATTCTAAGTATTTGGCTGTACACATGAAGACCCACAATGCTCAAATTCCAGAAAAAACTGAGGTTGAGGAGACCAAGGCTCCATTTGTCTGCGAAATCTGCAACACCGAGTTTTCCACATACAAATCGAAACGTTTGCACAAACGCATGCATGATCCTGTGAGGACTAAAGACATAGAGCCTCCTGTTAGTTATGGCATGCTAGGCGAGCAGCTGATCAATGATGATGTGCCACGCGAAATGTTTATTTGTGAGCTCTGCAATAAACCATACAATAAAGAATACGAGGAGGCTCACAAGAAGTTTCACAGCAACGTCACGGATTTTAATTGCGACATATGCAACCGCAAGTTCTTCACTCAAGAGAATCTCGACATGCATATGCGTGCACATTCGGACGCTAAAAAGTTTTCCTGCTCTTACTGTAAGAAGGGCTTCTTAACCAGCGATAAATTGGAAGCGCATATGTCTACCAAGTGCCATAAGAGGCAGTATGAATGCCAATACTGTGGCAGAAGGTTTGCCAGGCCGCACGAAAAGGTCAAGCACGAGCGGATTCACACAGGAGAAAAGCCCCACGTATGTGAAATATGCGGCAAGGCTTTTCGCGTATCCTACTGCTTAACTTTGCACATGCGGACTCATTCTGGTACACGGCCGTACAAGTGCGTTCATTGTGGTAAGCGGTTCAAGGCGCACAGCGTATACAATCACCACCTCTTAACCCACTCAGAGGACCGTAAATACAAATGCCCCTACTGCCCTAAAACATTTAAGACGGGCGTGCAATTGGCGGGCCACAAAAACAGTCACACAAAGCCGTTTACATGCACGGAGTGCAATCGTCCCTTTGCCTCCCTGTACGCGGTTAGGGCACATATGGAGACGCATCAACGGCAGAACAATCTCAAGTATAAGTGCTGGTTGTGTGGCGCATCCTATGCGAGGGCTTTTGCGCTTCGCGACCACGTCAGGGAGCAGCATGTCAATGAGCGCAACAATGCAGATCCCGATTCTATCATCTTTGATGATTACATCTcggaaaatatagaaacaaatgaGCCAATTTTAGGAGATGCAGGGGAAAGCATGTTGATCGATATAGGGGGTGGAACTGTTGAAAACATGGAAATACCGGATGTAGTAGCTGATACACAAACCCCCTTCAACACCACAAAGAGAGACTACCATCCTCTGGGAGGCACTGCGTCCTCACCCTCTGCCGCCACCCTGCTATTGCTGAAGAGGGTGCGACATGATTCCGTATCGGCGGCTGTTGCCAAACAGGACATGGCAGCATCCCTGTCGGTCACACTGAGCCAGAGCATGGATTCAGTGAACACCACCGTTGGGGGAGAAATGCAGTTTGAGTTACAAAGTGTAAGGACCCAACTTATCCGTCGAGACATTCAAGCGCAACGCGATAATACGCGACCCAGAAATCAATGTAAGTAA
- Protein Sequence
- MAPLLLDCPLCCSETFTCHNSLKYHLLSISDNLLCPSCEKRFEKIVDLAMHLGRQCKDSEEEPVEVESAQAMNKDLQVVEIQIKEENMENASVGVELEVTDSILATALMKTGDKADDVIENNSTVHEINDDTVIEDVVYHCSSCAISFTCIEEHLQKYHEGHQVFLQHSVTIENEEEYGEEGDVNDNSEILKELKSPEFLKTLEEQECVDKDGCLYTRRLVKIEKFWDEKEMKVEASESEKFAALAHANSTEHAHADSTEQPDVLQSLPVSNSGDDDGSILEIYQCANCSRKFASLNAYSDHRCATIRGKSKYKKCQLCKYTFIDSKYLAVHMKTHNAQIPEKTEVEETKAPFVCEICNTEFSTYKSKRLHKRMHDPVRTKDIEPPVSYGMLGEQLINDDVPREMFICELCNKPYNKEYEEAHKKFHSNVTDFNCDICNRKFFTQENLDMHMRAHSDAKKFSCSYCKKGFLTSDKLEAHMSTKCHKRQYECQYCGRRFARPHEKVKHERIHTGEKPHVCEICGKAFRVSYCLTLHMRTHSGTRPYKCVHCGKRFKAHSVYNHHLLTHSEDRKYKCPYCPKTFKTGVQLAGHKNSHTKPFTCTECNRPFASLYAVRAHMETHQRQNNLKYKCWLCGASYARAFALRDHVREQHVNERNNADPDSIIFDDYISENIETNEPILGDAGESMLIDIGGGTVENMEIPDVVADTQTPFNTTKRDYHPLGGTASSPSAATLLLLKRVRHDSVSAAVAKQDMAASLSVTLSQSMDSVNTTVGGEMQFELQSVRTQLIRRDIQAQRDNTRPRNQCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -